ATG13

Basic Information

Gene Symbol	ATG13
Entrez Id	9776
Position	chr11:46638826..46697569
Description	autophagy related 13
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10769204	11:46676357	T/C	ATG13	intron	0.984	0.93969	0.0118	1.411E-7		7
rs10838610	11:46686260	A/G	ATG13	intron	0.992	0.94158	0.0118	3.341E-7		2a
rs111269982	11:46679472	A/G	ATG13	intron	0.703	1.05295	0.0684	0.4511		5
rs111544937	11:46667115	A/G	ATG13	intron	0.703	0.94971	0.0684	0.4513		6
rs112712391	11:46642101	A/G	ATG13	intron	0.938	0.99710	0.0178	0.8713		7
rs113224942	11:46668597	T/C	ATG13	intron	0.965	1.06439	0.0480	0.1934		7
rs113542381	11:46649719	A/G	ATG13	intron	0.928	1.03107	0.0158	0.05305		7
rs113542547	11:46678292	C/G	ATG13	intron	0.683	0.88232	0.0542	0.02085		6
rs117492279	11:46655353	T/C	ATG13	intron,near-gene-5	0.674	0.91183	0.0554	0.09561		4
rs117605660	11:46642852	T/C	ATG13	intron	0.732	0.99651	0.0355	0.9215		7
rs117650983	11:46688369	C/G	ATG13	intron	0.834	1.07380	0.0526	0.1757		5
rs12292425	11:46644143	T/G	ATG13	intron	1.000	0.92072	0.0143	7.167E-9		6
rs12787314	11:46664618	C/G	ATG13	intron	0.883	1.07315	0.0210	0.0007887		4
rs13448	11:46695414	T/C	ATG13	untranslated-3	0.992	0.95619	0.0118	0.0001518		5
rs138230299	11:46641434	C/G	ATG13	intron	0.636	1.03572	0.0438	0.4234		-
rs150493060	11:46648659	A/G	ATG13	intron	0.938	0.99720	0.0178	0.8754		-
rs188487480	11:46667761	T/C	ATG13	intron	0.818	1.11583	0.0554	0.04782		-
rs35619591	11:46690413	A/G	ATG13	missense	0.672	1.02347	0.0526	0.6592		5
rs4307676	11:46668395	A/G	ATG13	intron	0.999	1.08556	0.0143	9.554E-9		7
rs4423142	11:46684677	T/G	ATG13	intron	0.996	0.92090	0.0143	8.216E-9		7
rs4606447	11:46691737	A/G	ATG13	intron	0.991	1.05464	0.0120	9.058E-6		2b
rs4752926	11:46692870	T/C	ATG13	intron	0.994	0.95829	0.0109	0.00009993		4
rs60722866	11:46650438	T/C	ATG13	intron	0.998	0.91558	0.0142	5.177E-10		5
rs60932698	11:46652582	A/G	ATG13	intron	1.000	0.92072	0.0143	7.323E-9		6
rs61884264	11:46639582	A/G	ATG13	intron,near-gene-5	1.000	1.09155	0.0142	6.391E-10		4
rs61884270	11:46652742	T/G	ATG13	intron	0.986	1.08959	0.0190	6.558E-6		7
rs61884271	11:46654404	T/C	ATG13	intron,near-gene-5	1.000	0.92063	0.0143	7.318E-9		7
rs61884272	11:46662117	A/G	ATG13	intron	0.912	1.12829	0.0304	0.00007355		6
rs61884273	11:46666271	T/G	ATG13	intron	0.999	0.92127	0.0143	1.003E-8		5
rs61884274	11:46666664	A/G	ATG13	intron	0.999	0.92118	0.0143	9.517E-9		6
rs61884275	11:46666805	A/T	ATG13	intron	0.912	0.88630	0.0304	0.00007351		7
rs61884292	11:46684524	A/T	ATG13	intron	0.996	0.92072	0.0143	8.448E-9		7
rs61884294	11:46693064	T/G	ATG13	intron	0.996	1.08415	0.0190	0.0000214		7
rs61884295	11:46693169	A/G	ATG13	intron	0.997	1.08145	0.0146	7.639E-8		7
rs6485686	11:46657430	T/G	ATG13	intron	0.993	0.94148	0.0118	3.199E-7		7
rs7109698	11:46673344	T/C	ATG13	intron	0.999	1.08926	0.0142	1.757E-9		7
rs71452737	11:46654578	A/T	ATG13	intron,near-gene-5	0.613	0.98069	0.0135	0.148		6
rs75952534	11:46674270	T/C	ATG13	intron	0.950	0.99005	0.0362	0.7833		5
rs76533702	11:46692689	T/C	ATG13	intron	0.985	0.98699	0.0174	0.4499		4
rs79317378	11:46641654	T/C	ATG13	intron	1.000	0.92118	0.0143	8.823E-9		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information