C3orf49

Basic Information

Gene Symbol	C3orf49
Entrez Id	132200
Position	chr3:63805041..63834312
Description	chromosome 3 open reading frame 49
Gene type	ncRNA

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs140980914	3:63815410	A/G	C3orf49	intron	0.953	0.94337	0.0373	0.1188		-
rs141112842	3:63817632	A/G	C3orf49	intron	0.988	0.95638	0.0545	0.4128		-
rs151162139	3:63816508	T/C	C3orf49	intron	0.724	0.95897	0.0643	0.5148		-
rs2291533	3:63817430	C/G	C3orf49	ncRNA	0.994	1.02276	0.0135	0.0955		7
rs2678351	3:63819060	T/C	C3orf49	intron,near-gene-3	0.974	1.02183	0.0144	0.1329		7
rs62253802	3:63814671	C/G	C3orf49	intron	0.813	0.96977	0.0245	0.2104		7
rs72888219	3:63815067	A/C	C3orf49	intron	0.978	1.07584	0.0559	0.1907		6
rs72888222	3:63818339	C/G	C3orf49	intron	0.981	1.08394	0.0560	0.1502		5
rs73120888	3:63815326	T/C	C3orf49	intron	0.764	0.97424	0.0267	0.3282		7
rs76190896	3:63815234	C/G	C3orf49	intron	0.987	1.05781	0.0541	0.299		7
rs76275095	3:63813419	A/T	C3orf49	intron	0.938	1.05591	0.0579	0.3468		7
rs79345457	3:63818259	A/G	C3orf49	intron	0.981	1.07896	0.0559	0.1737		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information