CD9

Basic Information

Gene Symbol	CD9
Entrez Id	928
Position	chr12:6309482..6347437
Description	CD9 molecule
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10774417	12:6323300	A/T	CD9	intron	0.934	0.97550	0.0186	0.1816		5
rs10774418	12:6325028	A/G	CD9	intron	0.958	1.02450	0.0188	0.1973		2b
rs10849418	12:6313261	T/C	CD9	intron	0.926	1.00341	0.0112	0.7604		7
rs10849419	12:6317008	T/C	CD9	intron	0.962	1.00682	0.0108	0.5284		5
rs10849420	12:6317314	T/C	CD9	intron	0.949	1.02573	0.0186	0.1725		7
rs10849421	12:6327008	A/G	CD9	intron	0.982	1.00190	0.0106	0.861		7
rs11064090	12:6325688	T/C	CD9	intron	0.948	1.01959	0.0187	0.298		4
rs11064092	12:6330472	A/G	CD9	intron	0.777	1.01390	0.0343	0.6883		5
rs11064098	12:6343123	T/C	CD9	intron	0.886	1.03221	0.0322	0.3254		3a
rs113472037	12:6331092	A/C	CD9	intron	0.855	0.99651	0.0518	0.9454		5
rs11568281	12:6322856	A/G	CD9	intron	0.608	1.05781	0.0480	0.2412		7
rs117761448	12:6323140	A/G	CD9	intron	0.616	0.97054	0.0491	0.5417		5
rs117868098	12:6331342	A/G	CD9	intron	0.604	1.01268	0.0464	0.7854		3a
rs118068787	12:6343075	C/G	CD9	intron	0.616	0.85624	0.0724	0.03212		2b
rs12314565	12:6310257	T/C	CD9	intron	0.905	0.97453	0.0192	0.1785		4
rs143915946	12:6320083	A/G	CD9	intron	0.776	1.00521	0.0641	0.9353		-
rs1990384	12:6342921	T/G	CD9	intron	0.986	1.00230	0.0106	0.829		2b
rs2072370	12:6345080	A/G	CD9	intron,untranslated-3	0.995	1.00140	0.0106	0.8931		4
rs2072372	12:6344600	A/C	CD9	intron,missense	0.995	1.00220	0.0106	0.836		4
rs2159522	12:6315487	C/G	CD9	intron	0.960	0.99461	0.0108	0.6154		7
rs2268009	12:6340388	T/C	CD9	intron	0.993	1.00300	0.0106	0.7764		2b
rs2268010	12:6339856	T/C	CD9	intron	0.981	0.99760	0.0107	0.8186		3a
rs2268013	12:6325914	C/G	CD9	intron	0.854	1.00321	0.0116	0.7849		4
rs2268014	12:6325582	C/G	CD9	intron	0.968	1.00230	0.0107	0.8268		4
rs2268015	12:6322817	T/C	CD9	intron	0.975	0.99990	0.0107	0.9953		6
rs2268016	12:6320386	T/C	CD9	intron	0.955	1.00823	0.0109	0.4551		6
rs2284348	12:6321862	C/G	CD9	intron	0.967	0.99342	0.0108	0.541		7
rs3181157	12:6308523	T/C	CD9	near-gene-5	0.949	0.97550	0.0186	0.1825		5
rs3181290	12:6334374	T/C	CD9	intron	0.744	0.99780	0.0350	0.9507		5
rs3181291	12:6341499	A/G	CD9	intron	0.990	0.99910	0.0106	0.9319		7
rs3181295	12:6344174	A/G	CD9	intron	0.984	1.00260	0.0108	0.8133		5
rs3181300	12:6345199	T/C	CD9	intron,untranslated-3	0.996	1.00140	0.0105	0.8907		6
rs3181301	12:6345784	A/C	CD9	intron,near-gene-3	0.996	1.00130	0.0105	0.9008		7
rs3782717	12:6332310	C/G	CD9	intron	0.983	0.99760	0.0106	0.8225		4
rs4764485	12:6319837	A/G	CD9	intron	0.966	1.00652	0.0108	0.5496		6
rs4764486	12:6327989	T/C	CD9	intron	0.982	1.00200	0.0106	0.8532		5
rs4764487	12:6332838	A/G	CD9	intron,near-gene-3	0.984	1.00924	0.0109	0.3979		5
rs4764488	12:6332910	A/G	CD9	intron,near-gene-3	0.983	1.00341	0.0106	0.7476		5
rs4764541	12:6313411	A/G	CD9	intron	0.966	1.00431	0.0107	0.6874		6
rs4764542	12:6313465	A/G	CD9	intron	0.960	0.99531	0.0108	0.6649		7
rs4764544	12:6345973	A/G	CD9	intron	0.693	0.95456	0.0616	0.4498		6
rs61917081	12:6338967	T/C	CD9	intron	0.633	0.98000	0.0651	0.7561		4
rs6489703	12:6339863	A/G	CD9	intron	0.747	0.99213	0.0166	0.6349		4
rs71579339	12:6344375	T/C	CD9	intron	0.813	1.01704	0.0684	0.8052		5
rs74881391	12:6325952	T/C	CD9	intron	0.693	1.08600	0.0610	0.1764		5
rs7964366	12:6346478	T/C	CD9	intron	0.995	0.99790	0.0106	0.844		6
rs797775	12:6311160	T/C	CD9	intron	0.940	1.00321	0.0109	0.7687		2a
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information