CDK2AP1

Basic Information

Gene Symbol	CDK2AP1
Entrez Id	8099
Position	chr12:123745538..123756687
Description	cyclin-dependent kinase 2 associated protein 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10083067	12:123752263	T/C	CDK2AP1	intron	0.994	0.96967	0.0227	0.1735		5
rs10773002	12:123746961	A/T	CDK2AP1	intron	0.998	1.09057	0.0119	3.317E-13		6
rs10846490	12:123750994	A/G	CDK2AP1	intron	0.993	0.97074	0.0226	0.1899		5
rs10846491	12:123753492	C/G	CDK2AP1	intron,near-gene-5	0.996	1.07176	0.0129	7.781E-8		5
rs11057219	12:123750073	T/C	CDK2AP1	intron	0.987	1.07176	0.0113	8.119E-10		7
rs11057222	12:123752905	A/G	CDK2AP1	intron,near-gene-5	0.994	0.97054	0.0226	0.1861		4
rs11057223	12:123755055	T/C	CDK2AP1	intron,near-gene-5	0.961	0.96002	0.0172	0.01753		2b
rs11057224	12:123755179	A/G	CDK2AP1	intron,near-gene-5	0.995	0.96223	0.0172	0.02528		4
rs112257759	12:123747714	T/C	CDK2AP1	intron	0.913	0.95993	0.0319	0.1991		6
rs115904911	12:123753853	A/G	CDK2AP1	intron,near-gene-5	0.601	0.99015	0.0398	0.8045		5
rs117661481	12:123755033	A/C	CDK2AP1	intron,near-gene-5	0.671	0.96223	0.0312	0.217		4
rs12146722	12:123749735	A/G	CDK2AP1	intron	0.955	0.95275	0.0324	0.1353		5
rs12824957	12:123750228	T/C	CDK2AP1	intron	0.997	0.93838	0.0132	1.438E-6		5
rs139263519	12:123755464	A/G	CDK2AP1	intron,near-gene-5,ncRNA	0.803	1.09834	0.0541	0.08302		-
rs145237336	12:123755970	A/G	CDK2AP1	intron,near-gene-5	0.761	1.06141	0.0212	0.005032		-
rs185878457	12:123756001	A/G	CDK2AP1	intron,near-gene-5	0.834	0.96996	0.0248	0.2176		-
rs189136922	12:123756493	C/G	CDK2AP1	intron,near-gene-5,untranslated-5	0.667	1.10021	0.0233	0.00004098		-
rs190283259	12:123748472	T/C	CDK2AP1	intron	0.663	1.22238	0.0774	0.009491		-
rs193010619	12:123755951	C/G	CDK2AP1	intron,near-gene-5	0.660	1.03427	0.0382	0.3785		-
rs2030401	12:123751339	A/G	CDK2AP1	intron	0.870	0.96127	0.0116	0.0007012		5
rs2271976	12:123751726	A/C	CDK2AP1	intron	0.995	0.96214	0.0172	0.02476		5
rs4553407	12:123750748	C/G	CDK2AP1	intron	0.991	0.93323	0.0113	8.695E-10		4
rs4759416	12:123746357	C/G	CDK2AP1	intron	0.994	1.07176	0.0129	7.586E-8		5
rs4759417	12:123746510	T/C	CDK2AP1	intron	0.994	0.93286	0.0129	6.915E-8		7
rs4759418	12:123746531	C/G	CDK2AP1	intron	1.000	0.88674	0.0249	1.392E-6		7
rs61231969	12:123748216	A/C	CDK2AP1	intron	0.999	1.12784	0.0249	1.39E-6		5
rs61953391	12:123747258	A/G	CDK2AP1	intron	0.933	0.96928	0.0415	0.452		7
rs61953394	12:123753372	T/C	CDK2AP1	intron,near-gene-5	0.995	0.96223	0.0172	0.02498		5
rs73231941	12:123753294	T/C	CDK2AP1	intron,near-gene-5	0.956	0.95180	0.0324	0.1278		5
rs75529277	12:123752419	T/C	CDK2AP1	intron	0.999	1.12513	0.0249	2.154E-6		5
rs76514049	12:123752637	A/G	CDK2AP1	intron	0.994	1.12727	0.0250	1.66E-6		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information