CHGA

Basic Information

Gene Symbol	CHGA
Entrez Id	1113
Position	chr14:93389445..93401638
Description	chromogranin A
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs111574060	14:93402915	T/G	CHGA	near-gene-3	0.706	1.07229	0.0485	0.1506		7
rs117159188	14:93402836	T/C	CHGA	near-gene-3	0.871	0.95256	0.0363	0.1808		5
rs11851859	14:93398144	A/G	CHGA	intron	0.949	1.01329	0.0131	0.3133		5
rs12878661	14:93400554	A/G	CHGA	intron	0.947	0.98896	0.0123	0.369		5
rs12878823	14:93400616	A/G	CHGA	intron	0.953	1.00612	0.0113	0.5924		5
rs143813987	14:93394175	A/G	CHGA	intron	0.910	0.97922	0.0277	0.4484		-
rs144938064	14:93395465	A/G	CHGA	intron	0.857	1.04865	0.0439	0.2797		-
rs185397045	14:93389965	T/C	CHGA	intron	0.885	1.05802	0.0333	0.09047		-
rs2236132	14:93398670	T/C	CHGA	intron	0.891	1.01359	0.0210	0.5185		5
rs2295395	14:93395407	A/G	CHGA	intron	0.968	1.00864	0.0120	0.4747		5
rs2295396	14:93395087	T/C	CHGA	intron	0.986	1.00541	0.0123	0.6597		5
rs2295397	14:93395044	T/C	CHGA	intron	0.984	1.00531	0.0123	0.6635		5
rs2295398	14:93395027	A/G	CHGA	intron	0.985	1.00521	0.0123	0.6739		5
rs2295399	14:93394901	T/C	CHGA	intron	0.918	0.94620	0.0204	0.006571		5
rs2295400	14:93394715	A/G	CHGA	intron	0.938	0.99810	0.0110	0.8625		5
rs2295401	14:93394681	T/C	CHGA	intron	0.981	1.00290	0.0123	0.8133		5
rs2402224	14:93392287	T/C	CHGA	intron	0.976	1.00000	0.0107	0.9994		5
rs2402225	14:93392433	A/G	CHGA	intron	0.971	1.00844	0.0120	0.4846		5
rs45617934	14:93403087	A/T	CHGA	near-gene-3	0.869	0.99900	0.0239	0.9656		5
rs4900162	14:93388106	A/G	CHGA	near-gene-5	0.970	0.98837	0.0127	0.3555		5
rs4900163	14:93399306	A/G	CHGA	intron	0.913	0.96079	0.0192	0.037		5
rs4905010	14:93388133	T/C	CHGA	near-gene-5	0.964	1.00552	0.0123	0.6543		5
rs59902246	14:93400791	T/C	CHGA	intron	0.946	1.01076	0.0113	0.3398		4
rs60756243	14:93400481	T/C	CHGA	intron	0.955	0.98610	0.0131	0.2863		5
rs6575303	14:93387559	T/C	CHGA	near-gene-5	0.966	1.01136	0.0128	0.3768		4
rs76093912	14:93397444	A/T	CHGA	intron	0.776	1.09144	0.0593	0.1399		4
rs76573347	14:93394717	A/G	CHGA	intron	0.755	0.91558	0.0612	0.1495		5
rs875395	14:93402093	C/G	CHGA	near-gene-3	0.926	1.00844	0.0111	0.447		5
rs941581	14:93401178	A/G	CHGA	coding-synon	0.935	1.00904	0.0120	0.4511		5
rs941582	14:93391490	T/C	CHGA	intron	0.972	0.99243	0.0120	0.5245		5
rs941583	14:93391377	A/T	CHGA	intron	0.972	0.99223	0.0120	0.5127		5
rs941584	14:93391322	T/C	CHGA	intron	0.974	0.99173	0.0127	0.5108		5
rs941585	14:93390805	A/G	CHGA	intron	0.804	1.03873	0.0285	0.1824		4
rs941586	14:93390199	A/C	CHGA	intron	0.943	0.98610	0.0123	0.2566		5
rs941587	14:93389964	C/G	CHGA	intron	0.968	1.01116	0.0127	0.3846		2b
rs9658628	14:93388386	A/G	CHGA	near-gene-5	0.937	0.98511	0.0123	0.2236		5
rs9658629	14:93388474	A/T	CHGA	near-gene-5	0.885	1.00582	0.0167	0.7279		5
rs9658630	14:93388478	T/C	CHGA	near-gene-5	0.971	0.98876	0.0127	0.3745		5
rs9658631	14:93388504	T/G	CHGA	near-gene-5	0.972	0.98876	0.0127	0.3751		5
rs9658634	14:93389030	A/G	CHGA	near-gene-5	0.972	1.01157	0.0127	0.3646		2b
rs9658635	14:93389077	T/C	CHGA	near-gene-5	0.974	1.00582	0.0123	0.6395		5
rs9658638	14:93389435	T/C	CHGA	near-gene-5	0.932	0.99651	0.0145	0.8102		2b
rs9658639	14:93389786	T/C	CHGA	intron	0.754	0.92904	0.0531	0.1658		3a
rs9658644	14:93391890	A/G	CHGA	intron	0.951	0.98531	0.0124	0.2331		5
rs9658649	14:93393102	T/C	CHGA	intron	0.864	1.06354	0.0503	0.2202		4
rs9658655	14:93398031	C/G	CHGA	intron,missense	0.916	1.03998	0.0192	0.04095		5
rs9658656	14:93398078	A/G	CHGA	intron	0.916	1.03977	0.0192	0.04212		5
rs9658657	14:93398178	A/G	CHGA	intron	0.777	0.91585	0.0593	0.138		5
rs9658660	14:93398446	T/C	CHGA	intron	0.794	1.06279	0.0396	0.1244		5
rs9658667	14:93399050	A/G	CHGA	missense	0.758	0.92487	0.0349	0.0251		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information