CHGB

Basic Information

Gene Symbol	CHGB
Entrez Id	1114
Position	chr20:5891974..5906007
Description	chromogranin B
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10454160	20:5906098	A/C	CHGB	near-gene-3	0.985	1.02000	0.0112	0.07536		7
rs10485493	20:5905250	T/C	CHGB	intron	0.967	1.12457	0.0676	0.08222		7
rs112415655	20:5901839	T/G	CHGB	intron	0.650	1.02255	0.0494	0.6517		6
rs13036884	20:5896721	A/C	CHGB	intron	0.945	0.96773	0.0164	0.04545		5
rs2268339	20:5900021	A/G	CHGB	intron	0.975	1.06120	0.0263	0.02409		4
rs2284660	20:5899272	T/C	CHGB	intron	0.959	1.05686	0.0261	0.03416		7
rs2300426	20:5892853	T/C	CHGB	intron	0.986	0.98265	0.0111	0.1142		6
rs2300427	20:5894586	T/G	CHGB	intron	0.985	0.98177	0.0110	0.09504		7
rs236137	20:5890145	T/C	CHGB	near-gene-5	0.995	0.99671	0.0111	0.7656		7
rs236138	20:5890360	T/C	CHGB	near-gene-5	0.992	0.98521	0.0123	0.2271		7
rs236144	20:5896515	A/T	CHGB	intron	0.990	0.99442	0.0111	0.6161		7
rs236146	20:5897362	A/G	CHGB	intron	0.989	0.99402	0.0121	0.6189		7
rs236147	20:5898991	C/G	CHGB	intron	0.989	0.99263	0.0109	0.4959		7
rs236148	20:5901931	T/C	CHGB	intron	0.996	1.00713	0.0109	0.5155		6
rs236149	20:5902668	T/C	CHGB	intron	0.998	1.00713	0.0109	0.5107		5
rs236151	20:5903517	A/G	CHGB	missense	0.997	1.01481	0.0126	0.2417		7
rs236154	20:5905472	T/G	CHGB	intron	1.000	1.00662	0.0108	0.5423		7
rs236155	20:5905550	A/G	CHGB	intron	1.000	1.00662	0.0108	0.5428		7
rs236158	20:5906456	T/C	CHGB	near-gene-3	0.998	0.99342	0.0109	0.5432		5
rs454328	20:5900289	A/G	CHGB	intron	0.994	1.00713	0.0109	0.513		3a
rs4813784	20:5901863	C/G	CHGB	intron	0.995	1.00753	0.0109	0.4918		6
rs4815876	20:5902853	A/C	CHGB	intron	0.997	1.00753	0.0109	0.488		5
rs6085323	20:5899609	T/C	CHGB	intron	0.985	0.97902	0.0112	0.05805		4
rs6116992	20:5890583	T/C	CHGB	near-gene-5	0.994	0.99671	0.0111	0.7642		7
rs6133278	20:5903223	A/G	CHGB	missense	0.947	1.00562	0.0332	0.8666		7
rs6139868	20:5890457	T/C	CHGB	near-gene-5	0.933	1.01390	0.0115	0.232		6
rs6139872	20:5902970	T/C	CHGB	intron	0.950	0.97365	0.0433	0.5374		6
rs73083188	20:5890247	T/C	CHGB	near-gene-5	0.809	0.97054	0.0563	0.5956		6
rs73596140	20:5901577	T/C	CHGB	intron	0.980	1.06109	0.0264	0.0246		6
rs74621755	20:5904289	A/G	CHGB	missense	0.952	1.02655	0.0433	0.5459		4
rs75732502	20:5894139	T/C	CHGB	intron	0.982	1.00864	0.0239	0.7202		7
rs78101688	20:5903192	A/G	CHGB	coding-synon	0.988	1.01015	0.0238	0.6709		7
rs80190152	20:5900931	T/C	CHGB	intron	0.985	1.00975	0.0238	0.6827		5
rs881118	20:5903388	A/C	CHGB	missense	0.988	0.93960	0.0262	0.01749		7
rs910122	20:5903323	A/G	CHGB	missense	0.999	1.00723	0.0109	0.5079		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information