CHRNA7

Basic Information

Gene Symbol	CHRNA7
Entrez Id	1139
Position	chr15:32322691..32462384
Description	cholinergic receptor, nicotinic, alpha 7 (neuronal)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1039394	15:32407729	C/G	CHRNA7	intron	0.681	0.94393	0.0258	0.0253		7
rs10438287	15:32402003	A/G	CHRNA7	intron	0.989	1.00975	0.0131	0.4571		7
rs10438339	15:32400218	T/C	CHRNA7	intron	0.802	1.00985	0.0118	0.4059		5
rs10438340	15:32401406	T/C	CHRNA7	intron	0.975	0.98985	0.0132	0.4404		7
rs10438341	15:32401608	T/C	CHRNA7	intron	0.981	1.01319	0.0114	0.2492		5
rs10438342	15:32402046	A/G	CHRNA7	intron	0.993	0.98669	0.0113	0.2378		5
rs10459632	15:32428968	C/G	CHRNA7	intron	0.923	0.97726	0.0110	0.03653		6
rs10459633	15:32429000	A/G	CHRNA7	intron	0.744	0.98511	0.0126	0.2361		6
rs10468022	15:32423933	A/G	CHRNA7	intron	0.981	0.98246	0.0107	0.09736		6
rs10775173	15:32343377	T/C	CHRNA7	intron	0.725	1.00341	0.0161	0.834		5
rs11071503	15:32334956	T/C	CHRNA7	intron	0.998	1.00411	0.0126	0.7426		7
rs11071511	15:32344335	T/C	CHRNA7	intron	0.996	0.99970	0.0233	0.9899		7
rs11071512	15:32345139	T/C	CHRNA7	intron	0.997	0.99960	0.0233	0.9871		6
rs11071515	15:32349507	A/G	CHRNA7	intron	0.971	1.00723	0.0262	0.7833		7
rs11071518	15:32350464	A/G	CHRNA7	intron	0.968	1.00652	0.0262	0.8038		5
rs11071530	15:32359972	A/G	CHRNA7	intron	0.981	0.99173	0.0177	0.6411		7
rs11071532	15:32361301	A/T	CHRNA7	intron	0.980	1.00864	0.0177	0.6286		7
rs11071536	15:32364148	A/T	CHRNA7	intron	0.979	0.99283	0.0177	0.6837		6
rs11071593	15:32444373	T/C	CHRNA7	intron	0.762	0.99651	0.0177	0.8438		5
rs11071594	15:32444596	A/G	CHRNA7	intron	0.768	1.01298	0.0126	0.3056		7
rs113360434	15:32358120	A/G	CHRNA7	intron	0.898	0.99045	0.0234	0.6807		5
rs113629315	15:32462683	A/C	CHRNA7	near-gene-3	0.723	1.03365	0.0201	0.09999		5
rs113927723	15:32410963	C/G	CHRNA7	intron	0.683	0.97941	0.0677	0.7583		6
rs116854980	15:32335472	A/T	CHRNA7	intron	0.670	1.03884	0.0304	0.2101		7
rs116987149	15:32415197	A/C	CHRNA7	intron	0.773	1.08329	0.0409	0.05054		7
rs117126238	15:32369110	T/C	CHRNA7	intron	0.834	1.02583	0.0381	0.5026		7
rs117607568	15:32414984	C/G	CHRNA7	intron	0.630	0.96667	0.0408	0.4064		7
rs117638796	15:32413895	A/G	CHRNA7	intron	0.699	0.99442	0.0333	0.8664		7
rs117978103	15:32367451	T/C	CHRNA7	intron	0.768	0.99531	0.0417	0.9101		6
rs118112935	15:32336049	C/G	CHRNA7	intron	0.707	1.02316	0.0486	0.6372		5
rs11852956	15:32403330	T/C	CHRNA7	intron	0.994	1.01066	0.0131	0.4152		7
rs11858834	15:32402921	A/G	CHRNA7	intron	0.993	1.01005	0.0131	0.4418		5
rs12101471	15:32365883	T/G	CHRNA7	intron	0.959	0.99970	0.0258	0.9914		7
rs12101719	15:32363818	A/G	CHRNA7	intron	0.960	1.00020	0.0258	0.9941		7
rs12438848	15:32396371	T/C	CHRNA7	intron	0.970	0.99372	0.0109	0.5626		6
rs12438995	15:32405130	A/G	CHRNA7	intron	0.980	1.01056	0.0163	0.5166		7
rs12440000	15:32412930	T/C	CHRNA7	intron	0.921	0.99243	0.0160	0.634		7
rs12440334	15:32343177	T/C	CHRNA7	intron	0.992	0.99910	0.0235	0.9708		7
rs12440480	15:32391391	A/G	CHRNA7	intron	0.916	0.99880	0.0151	0.9363		6
rs12591836	15:32361340	T/G	CHRNA7	intron	0.961	1.00361	0.0258	0.8877		7
rs12592714	15:32367172	T/G	CHRNA7	intron	0.959	0.99970	0.0258	0.991		6
rs12593470	15:32361239	T/G	CHRNA7	intron	0.961	0.99681	0.0258	0.9009		7
rs12899561	15:32376649	A/G	CHRNA7	intron	0.944	1.00190	0.0260	0.9419		7
rs12904275	15:32371089	A/G	CHRNA7	intron	0.958	0.99930	0.0258	0.9781		5
rs12904458	15:32419788	T/C	CHRNA7	intron	0.985	0.98226	0.0107	0.09377		7
rs12904551	15:32347657	T/C	CHRNA7	intron	0.991	0.99531	0.0127	0.7123		7
rs12906868	15:32444995	A/C	CHRNA7	intron	0.765	1.00220	0.0176	0.9017		5
rs12908877	15:32323454	A/G	CHRNA7	intron	0.988	1.00250	0.0121	0.8351		7
rs12910885	15:32333114	A/G	CHRNA7	intron	0.999	1.00421	0.0126	0.7416		6
rs12914788	15:32376437	A/C	CHRNA7	intron	0.969	1.00552	0.0179	0.758		7
rs12915265	15:32409066	T/C	CHRNA7	intron	0.993	1.01096	0.0131	0.4052		7
rs12915695	15:32403345	A/G	CHRNA7	intron	0.993	0.98669	0.0113	0.2377		7
rs12916592	15:32360563	A/G	CHRNA7	intron	0.980	1.00894	0.0177	0.6171		6
rs12916635	15:32336527	T/C	CHRNA7	intron	0.996	1.00230	0.0233	0.9219		7
rs12916780	15:32429401	A/G	CHRNA7	intron	0.929	1.02429	0.0114	0.03469		7
rs12916879	15:32417333	A/G	CHRNA7	intron	0.974	0.98167	0.0107	0.08381		6
rs13329159	15:32408359	A/G	CHRNA7	intron	0.971	0.99293	0.0156	0.6476		7
rs13329490	15:32408231	A/C	CHRNA7	intron	0.973	1.00592	0.0155	0.7055		7
rs13329600	15:32406346	C/G	CHRNA7	intron	0.920	0.99293	0.0117	0.5429		7
rs1355920	15:32357728	A/G	CHRNA7	intron	0.981	1.00844	0.0177	0.6354		6
rs139940917	15:32336774	T/C	CHRNA7	intron	0.660	1.02214	0.0618	0.7235		-
rs142784470	15:32436814	T/C	CHRNA7	intron	0.760	0.99382	0.0177	0.7256		-
rs143020264	15:32436518	T/C	CHRNA7	intron	0.705	0.99720	0.0282	0.9221		-
rs143116356	15:32367118	T/C	CHRNA7	intron	0.791	0.98069	0.0325	0.5487		-
rs143213200	15:32338796	T/C	CHRNA7	intron	0.991	1.00572	0.0138	0.6772		-
rs144911635	15:32378406	A/G	CHRNA7	intron	0.702	0.95495	0.0429	0.282		-
rs145182083	15:32375080	T/G	CHRNA7	intron	0.702	1.04749	0.0429	0.2795		-
rs145252997	15:32433603	T/C	CHRNA7	intron	0.857	1.02020	0.0114	0.07976		-
rs145710489	15:32343637	A/G	CHRNA7	intron	0.796	0.98079	0.0188	0.3016		-
rs146416392	15:32362919	T/C	CHRNA7	intron	0.967	1.00773	0.0242	0.749		-
rs146623074	15:32400002	A/G	CHRNA7	intron	0.659	0.99332	0.0412	0.8707		-
rs147009267	15:32342278	A/C	CHRNA7	intron	0.998	1.00160	0.0234	0.944		-
rs148117639	15:32358114	T/C	CHRNA7	intron	0.638	0.87433	0.0638	0.03535		-
rs148308001	15:32436317	A/G	CHRNA7	intron	0.713	0.99203	0.0315	0.7986		-
rs148311092	15:32339889	T/C	CHRNA7	intron	0.901	1.00461	0.0152	0.7616		-
rs149546398	15:32401546	T/C	CHRNA7	intron	0.734	1.06503	0.0579	0.2766		-
rs149637464	15:32322712	T/C	CHRNA7	ncRNA,untranslated-5	0.614	1.01288	0.0277	0.6445		-
rs149965428	15:32434033	A/G	CHRNA7	intron	0.771	1.00471	0.0175	0.7895		-
rs150564114	15:32397705	A/G	CHRNA7	intron	0.668	1.08970	0.0526	0.1023		-
rs1514248	15:32377683	T/C	CHRNA7	intron	0.961	1.01197	0.0181	0.5114		6
rs1514250	15:32377706	C/G	CHRNA7	intron	0.962	1.01288	0.0180	0.479		7
rs1514252	15:32335685	A/T	CHRNA7	intron	0.991	0.99661	0.0137	0.806		5
rs1514263	15:32375158	A/T	CHRNA7	intron	0.975	1.00572	0.0178	0.7506		7
rs1604265	15:32374369	A/G	CHRNA7	intron	0.975	1.00582	0.0178	0.7457		5
rs1606659	15:32332453	A/G	CHRNA7	intron	0.995	1.00642	0.0137	0.6406		7
rs1606660	15:32370076	T/G	CHRNA7	intron	0.978	0.99322	0.0178	0.7002		7
rs16956132	15:32324755	A/T	CHRNA7	intron	0.952	1.00672	0.0260	0.7965		6
rs16956147	15:32337155	T/C	CHRNA7	intron	0.965	0.99511	0.0261	0.8524		7
rs16956151	15:32337160	T/C	CHRNA7	intron	0.986	1.00552	0.0138	0.6899		7
rs16956223	15:32410783	A/G	CHRNA7	intron	0.969	0.99352	0.0156	0.6748		7
rs17604861	15:32403369	A/G	CHRNA7	intron	0.694	1.00030	0.0305	0.9925		7
rs181383953	15:32343448	C/G	CHRNA7	intron	0.679	1.00944	0.0475	0.8435		-
rs181457981	15:32343651	T/C	CHRNA7	intron	0.706	1.02665	0.0486	0.5877		-
rs187572992	15:32378310	C/G	CHRNA7	intron	0.786	1.01654	0.0328	0.6168		-
rs190009645	15:32343508	T/G	CHRNA7	intron	0.645	0.98995	0.0547	0.8534		-
rs190273561	15:32339516	A/T	CHRNA7	intron	0.641	1.03469	0.0682	0.6171		-
rs190306905	15:32338016	T/C	CHRNA7	intron	0.985	1.00511	0.0138	0.7093		-
rs2133965	15:32384554	A/G	CHRNA7	intron	0.900	0.99710	0.0211	0.8906		5
rs2175884	15:32387121	A/G	CHRNA7	intron	0.950	1.00975	0.0142	0.4935		7
rs2175886	15:32355947	T/C	CHRNA7	intron	0.914	1.00230	0.0112	0.835		7
rs2221223	15:32411393	T/G	CHRNA7	intron	0.966	1.00682	0.0156	0.6648		7
rs2292571	15:32322929	A/G	CHRNA7	coding-synon,intron	0.773	1.01015	0.0261	0.6996		5
rs2337503	15:32330390	A/T	CHRNA7	intron	0.785	1.01076	0.0205	0.6007		6
rs2337506	15:32346067	A/G	CHRNA7	intron	0.991	1.00471	0.0127	0.7086		5
rs2337508	15:32365966	T/C	CHRNA7	intron	0.978	0.99283	0.0177	0.6828		7
rs2337510	15:32428561	A/G	CHRNA7	intron	0.949	1.01826	0.0109	0.0949		7
rs2337979	15:32436717	A/G	CHRNA7	intron	0.932	1.02010	0.0114	0.0808		7
rs2337980	15:32444196	T/C	CHRNA7	intron	0.794	0.98649	0.0119	0.2502		7
rs2611605	15:32441633	T/C	CHRNA7	intron	0.940	0.98748	0.0141	0.3696		7
rs2651418	15:32439281	T/C	CHRNA7	intron	0.924	0.98679	0.0110	0.2265		7
rs2651419	15:32437751	T/C	CHRNA7	intron	0.611	1.02112	0.0168	0.214		7
rs2651420	15:32429102	T/G	CHRNA7	intron	0.701	0.98491	0.0165	0.3554		7
rs28392848	15:32352557	A/G	CHRNA7	intron	0.953	1.00632	0.0178	0.7221		6
rs28448702	15:32352556	T/C	CHRNA7	intron	0.953	0.99950	0.0261	0.9853		6
rs28452053	15:32390672	A/C	CHRNA7	intron	0.986	0.99084	0.0139	0.5047		5
rs28522500	15:32327396	T/C	CHRNA7	intron	0.958	0.99960	0.0180	0.9808		5
rs28531779	15:32322604	C/G	CHRNA7	near-gene-5	0.822	1.00622	0.0239	0.7944		2b
rs28535123	15:32355763	T/C	CHRNA7	intron	0.959	0.99980	0.0258	0.9944		7
rs28538494	15:32395568	A/G	CHRNA7	intron	0.985	1.00864	0.0139	0.5372		6
rs28546607	15:32344358	A/G	CHRNA7	intron	0.968	1.00682	0.0263	0.7972		7
rs28549350	15:32412015	A/G	CHRNA7	intron	0.954	0.99293	0.0157	0.6505		5
rs28565043	15:32402112	A/G	CHRNA7	intron	0.989	0.99035	0.0131	0.4588		5
rs28566692	15:32355691	T/G	CHRNA7	intron	0.960	0.99890	0.0259	0.9676		5
rs28621653	15:32351960	C/G	CHRNA7	intron	0.956	0.99770	0.0258	0.9298		6
rs28639797	15:32354805	T/C	CHRNA7	intron	0.979	1.00602	0.0178	0.7354		6
rs28688416	15:32413766	A/G	CHRNA7	intron	0.930	0.99263	0.0161	0.6442		7
rs28704995	15:32354690	A/C	CHRNA7	intron	0.995	0.99193	0.0234	0.7304		6
rs28758460	15:32383160	A/T	CHRNA7	intron	0.875	0.99581	0.0269	0.8746		7
rs2878994	15:32411847	T/G	CHRNA7	intron	0.962	1.00662	0.0157	0.6733		6
rs28799045	15:32379056	A/T	CHRNA7	intron	0.902	1.01136	0.0275	0.6804		5
rs3087454	15:32320967	A/C	CHRNA7	near-gene-5	0.986	0.99621	0.0121	0.7567		6
rs34021445	15:32339505	A/T	CHRNA7	intron	0.849	0.99720	0.0165	0.8636		7
rs34233374	15:32406348	C/G	CHRNA7	intron	0.979	0.98936	0.0132	0.417		7
rs34280620	15:32431233	A/G	CHRNA7	intron	0.822	0.98334	0.0152	0.2684		7
rs34589529	15:32413075	A/G	CHRNA7	intron	0.958	0.98787	0.0133	0.3579		7
rs34863647	15:32361194	A/G	CHRNA7	intron	0.961	0.99681	0.0258	0.9007		7
rs35057608	15:32403531	T/G	CHRNA7	intron	0.994	0.98985	0.0131	0.4353		7
rs35114543	15:32347464	T/C	CHRNA7	intron	0.963	0.99930	0.0121	0.9541		6
rs35640276	15:32405868	C/G	CHRNA7	intron	0.993	0.98916	0.0131	0.4054		6
rs3826029	15:32321485	T/C	CHRNA7	near-gene-5	0.984	1.00713	0.0138	0.6053		5
rs4262706	15:32434557	A/C	CHRNA7	intron	0.891	0.98157	0.0118	0.1145		7
rs4281464	15:32434237	A/G	CHRNA7	intron	0.925	0.98039	0.0114	0.08341		7
rs4471392	15:32434605	A/G	CHRNA7	intron	0.841	1.01877	0.0116	0.1084		7
rs4779563	15:32337237	T/C	CHRNA7	intron	0.999	1.00421	0.0126	0.7365		7
rs4779564	15:32342473	T/C	CHRNA7	intron	0.862	0.98472	0.0218	0.4797		7
rs4779565	15:32390070	T/G	CHRNA7	intron	0.969	0.99402	0.0109	0.5799		7
rs4779960	15:32342885	T/C	CHRNA7	intron	0.862	0.99253	0.0215	0.729		7
rs4779962	15:32343458	T/G	CHRNA7	intron	0.905	0.99481	0.0126	0.6782		5
rs4779963	15:32343466	A/G	CHRNA7	intron	0.976	0.99730	0.0126	0.831		5
rs4779964	15:32343548	A/G	CHRNA7	intron	0.766	1.00290	0.0203	0.8869		7
rs4779965	15:32343625	T/C	CHRNA7	intron	0.608	1.00874	0.0320	0.7857		7
rs4779966	15:32343634	A/G	CHRNA7	intron	0.819	1.00632	0.0200	0.7546		7
rs4779967	15:32343799	A/G	CHRNA7	intron	0.854	1.00020	0.0205	0.9914		6
rs4779968	15:32343846	T/G	CHRNA7	intron	0.986	1.00341	0.0127	0.7913		7
rs4779969	15:32348931	A/C	CHRNA7	intron	0.997	0.99810	0.0233	0.9352		6
rs4779970	15:32349878	T/C	CHRNA7	intron	0.996	1.00190	0.0233	0.9351		7
rs4779971	15:32349964	T/C	CHRNA7	intron	0.979	1.00672	0.0128	0.6016		7
rs4779973	15:32350006	C/G	CHRNA7	intron	0.996	1.00230	0.0233	0.9214		6
rs4779975	15:32370069	T/C	CHRNA7	intron	0.958	0.99940	0.0258	0.9801		7
rs4779978	15:32420408	T/C	CHRNA7	intron	0.958	0.97765	0.0112	0.04329		7
rs58764778	15:32337793	A/G	CHRNA7	intron	0.993	0.99362	0.0138	0.6404		7
rs60109258	15:32396848	T/C	CHRNA7	intron	0.974	1.00190	0.0109	0.8638		4
rs60879251	15:32436816	A/G	CHRNA7	intron	0.685	0.99442	0.0279	0.8421		6
rs61027465	15:32439006	A/G	CHRNA7	intron	0.767	1.01674	0.0178	0.3534		7
rs61573551	15:32403206	A/G	CHRNA7	intron	0.873	0.98807	0.0167	0.4718		6
rs62002890	15:32331294	A/G	CHRNA7	intron	0.787	0.97629	0.0207	0.2446		6
rs62002891	15:32336206	A/G	CHRNA7	intron	0.792	1.02245	0.0207	0.2829		7
rs62003561	15:32352218	A/T	CHRNA7	intron	0.811	0.96802	0.0373	0.3837		7
rs62003564	15:32364120	A/G	CHRNA7	intron	0.781	1.03149	0.0208	0.1368		7
rs62003565	15:32365664	A/G	CHRNA7	intron	0.739	1.04739	0.0323	0.1513		7
rs62003566	15:32369457	A/C	CHRNA7	intron	0.739	0.95466	0.0323	0.1503		6
rs62003621	15:32379161	A/G	CHRNA7	intron	0.776	1.03521	0.0207	0.09474		7
rs62003625	15:32404937	T/C	CHRNA7	intron	0.980	0.98876	0.0163	0.4872		5
rs62003626	15:32411085	T/G	CHRNA7	intron	0.796	1.07347	0.0404	0.07897		5
rs6494165	15:32321286	T/G	CHRNA7	near-gene-5	0.987	1.00833	0.0234	0.7223		1d
rs6494169	15:32336050	A/T	CHRNA7	intron	0.969	0.99045	0.0229	0.6748		5
rs6494171	15:32341979	A/G	CHRNA7	intron	0.850	0.99064	0.0213	0.6604		6
rs6494182	15:32345695	A/G	CHRNA7	intron	0.997	0.99920	0.0233	0.9715		6
rs6494185	15:32346110	A/G	CHRNA7	intron	0.996	0.99920	0.0233	0.9735		5
rs6494209	15:32372129	T/C	CHRNA7	intron	0.895	1.00401	0.0114	0.7241		7
rs6494211	15:32377588	A/T	CHRNA7	intron	0.881	1.00140	0.0118	0.9056		7
rs6494212	15:32385119	T/C	CHRNA7	intron	0.914	1.00924	0.0121	0.4501		6
rs6494216	15:32387848	C/G	CHRNA7	intron	0.972	1.00884	0.0141	0.5324		5
rs6494223	15:32396457	T/C	CHRNA7	intron	0.974	1.00130	0.0109	0.9047		6
rs6494247	15:32435628	T/C	CHRNA7	intron	0.926	1.02010	0.0114	0.08199		7
rs6494248	15:32435976	A/C	CHRNA7	intron	0.928	1.02030	0.0114	0.07815		7
rs6494249	15:32437603	T/C	CHRNA7	intron	0.765	1.01298	0.0178	0.4681		7
rs66507256	15:32386213	T/C	CHRNA7	intron	0.880	0.99342	0.0138	0.6317		7
rs67107029	15:32414756	A/G	CHRNA7	intron	0.775	0.99611	0.0189	0.8372		5
rs67502336	15:32365640	C/G	CHRNA7	intron	0.886	0.99970	0.0118	0.9825		6
rs71476581	15:32366148	A/G	CHRNA7	intron	0.857	0.94876	0.0375	0.1611		6
rs71476582	15:32366332	T/G	CHRNA7	intron	0.959	0.99940	0.0258	0.9812		7
rs7167551	15:32328103	A/G	CHRNA7	intron	0.996	1.00000	0.0233	0.9992		7
rs7170028	15:32425001	T/C	CHRNA7	intron	0.982	0.98334	0.0107	0.115		7
rs7172315	15:32334339	A/G	CHRNA7	intron	0.995	1.00582	0.0137	0.6719		7
rs7173586	15:32342182	T/C	CHRNA7	intron	0.948	0.99005	0.0228	0.6602		7
rs7179008	15:32443923	A/G	CHRNA7	intron	0.844	1.01877	0.0133	0.1611		6
rs7179103	15:32364944	A/C	CHRNA7	intron	0.979	1.00713	0.0177	0.6895		7
rs7180423	15:32343620	A/G	CHRNA7	intron	0.941	0.99074	0.0144	0.5166		7
rs7181757	15:32370707	C/G	CHRNA7	intron	0.978	1.00692	0.0178	0.6988		7
rs7182687	15:32340452	C/G	CHRNA7	intron	0.986	0.99293	0.0138	0.6094		6
rs72713527	15:32320737	T/C	CHRNA7	near-gene-5	0.647	1.00894	0.0421	0.8324		6
rs72713531	15:32329366	A/G	CHRNA7	intron	0.997	0.99960	0.0234	0.9848		7
rs72713534	15:32330933	T/C	CHRNA7	intron	0.634	0.98857	0.0592	0.8452		6
rs72713538	15:32337120	A/G	CHRNA7	intron	0.998	0.99850	0.0234	0.9484		7
rs72713539	15:32337330	T/G	CHRNA7	intron	0.995	1.00541	0.0137	0.6927		7
rs72713546	15:32345183	T/C	CHRNA7	intron	0.993	1.00441	0.0241	0.8556		6
rs72713556	15:32350448	C/G	CHRNA7	intron	0.992	1.00461	0.0241	0.8495		5
rs72713557	15:32353454	A/G	CHRNA7	intron	0.843	0.99980	0.0278	0.9937		5
rs72713562	15:32363756	A/G	CHRNA7	intron	0.993	0.99183	0.0234	0.7272		6
rs72713563	15:32363908	T/C	CHRNA7	intron	0.645	1.07262	0.0479	0.1431		6
rs72713565	15:32365823	A/G	CHRNA7	intron	0.993	0.99183	0.0234	0.7269		7
rs72713566	15:32365919	T/G	CHRNA7	intron	0.993	0.99183	0.0234	0.7268		7
rs72713572	15:32371607	T/C	CHRNA7	intron	0.992	0.99173	0.0234	0.7232		7
rs72713574	15:32373378	T/C	CHRNA7	intron	0.991	1.00672	0.0235	0.7759		6
rs72713579	15:32378256	A/G	CHRNA7	intron	0.992	1.00823	0.0234	0.7273		7
rs74549739	15:32381708	A/G	CHRNA7	intron	0.629	1.01420	0.0402	0.7251		7
rs74720371	15:32415937	T/C	CHRNA7	intron	0.628	1.02132	0.0454	0.6414		7
rs74729524	15:32349598	A/C	CHRNA7	intron	0.679	1.10860	0.0535	0.05403		6
rs74739587	15:32340726	T/C	CHRNA7	intron	0.965	1.00481	0.0262	0.8534		7
rs74874994	15:32406022	T/C	CHRNA7	intron	0.736	1.01197	0.0197	0.545		7
rs75171924	15:32377975	T/C	CHRNA7	intron	0.843	1.02173	0.0214	0.3138		6
rs75666889	15:32337914	A/C	CHRNA7	intron	0.980	0.99322	0.0139	0.6273		6
rs75826401	15:32433791	T/G	CHRNA7	intron	0.745	1.02041	0.0139	0.148		6
rs75831111	15:32323603	A/C	CHRNA7	intron	0.707	0.92054	0.0520	0.1117		7
rs75918022	15:32443151	C/G	CHRNA7	intron	0.625	0.96841	0.0208	0.1229		6
rs76286659	15:32398035	C/G	CHRNA7	intron	0.660	0.92275	0.0654	0.2186		7
rs76336281	15:32334656	T/C	CHRNA7	intron	0.750	0.95142	0.0318	0.1173		2c
rs76472888	15:32381224	A/C	CHRNA7	intron	0.673	1.03956	0.0424	0.3601		6
rs77015915	15:32433797	A/C	CHRNA7	intron	0.743	1.02255	0.0140	0.1117		7
rs77873075	15:32433789	T/C	CHRNA7	intron	0.753	1.01694	0.0138	0.2238		6
rs78077581	15:32379224	A/G	CHRNA7	intron	0.647	0.93267	0.0422	0.09892		7
rs78184570	15:32338787	A/G	CHRNA7	intron	0.995	1.00250	0.0121	0.839		7
rs78215228	15:32423604	A/G	CHRNA7	intron	0.694	0.97677	0.0392	0.5481		6
rs78481552	15:32413967	T/C	CHRNA7	intron	0.709	0.94895	0.0590	0.3741		7
rs78764527	15:32381843	C/G	CHRNA7	intron	0.786	1.01258	0.0495	0.8009		6
rs78827942	15:32444185	T/C	CHRNA7	intron	0.791	1.02573	0.0180	0.1584		7
rs79156589	15:32320713	A/C	CHRNA7	near-gene-5	0.897	0.99094	0.0347	0.7923		7
rs79949312	15:32390225	A/G	CHRNA7	intron	0.647	0.95313	0.0355	0.1773		6
rs80231795	15:32340616	T/C	CHRNA7	intron	0.965	0.99521	0.0262	0.8533		7
rs8027034	15:32384012	A/G	CHRNA7	intron	0.979	1.01147	0.0233	0.6239		5
rs8036104	15:32389362	A/C	CHRNA7	intron	0.984	0.99173	0.0140	0.5522		4
rs8036584	15:32406290	T/C	CHRNA7	intron	0.960	1.01106	0.0132	0.4049		6
rs8037084	15:32394649	A/G	CHRNA7	intron	0.986	0.99054	0.0139	0.4939		7
rs8037484	15:32346874	A/G	CHRNA7	intron	0.990	1.00511	0.0127	0.6876		6
rs8038422	15:32437530	T/C	CHRNA7	intron	0.767	0.98699	0.0178	0.4616		7
rs8041098	15:32330785	T/C	CHRNA7	intron	0.995	0.99362	0.0137	0.6422		7
rs868437	15:32324277	T/C	CHRNA7	intron	0.990	0.99641	0.0121	0.765		7
rs883473	15:32325676	A/G	CHRNA7	intron	0.989	1.00190	0.0120	0.8719		5
rs885071	15:32324576	T/G	CHRNA7	intron	0.985	1.00773	0.0138	0.5777		7
rs885072	15:32323962	A/G	CHRNA7	intron	0.985	1.00310	0.0121	0.7986		6
rs885073	15:32323919	A/G	CHRNA7	intron	0.989	1.00341	0.0121	0.7761		7
rs904951	15:32418038	A/G	CHRNA7	intron	0.984	1.01806	0.0107	0.09404		5
rs904952	15:32418745	T/C	CHRNA7	intron	0.985	0.98147	0.0107	0.0794		7
rs9672321	15:32344189	A/G	CHRNA7	intron	0.987	1.00612	0.0138	0.6581		7
rs9788657	15:32395026	A/C	CHRNA7	intron	0.985	1.00874	0.0139	0.5303		6
rs9788679	15:32399317	A/C	CHRNA7	intron	0.968	1.00250	0.0141	0.8622		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
18668039	GWAS	Phase I: 1433 cases and 33250 controls; Phase II: 3285 cases and 7960 controls
18668038	GWAS	3391 cases; 3181 controls
19880096	GWAS	575 cases; 564 controls
21489405	GWAS	834 cases; 672 controls
19181681	GWAS	471 cases; 2792 controls
22118685	GWAS	235 cases; 191 controls
Reference	Study type	Sample size

eQTL Information