CTCF

Basic Information

Gene Symbol	CTCF
Entrez Id	10664
Position	chr16:67596310..67673088
Description	CCCTC-binding factor (zinc finger protein)
Gene type	protein coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs111294469	16:67668523	C/G	CTCF	intron	0.908	0.97395	0.0266	0.3202		6
rs111743037	16:67671525	A/G	CTCF	intron	0.936	0.98442	0.0372	0.6734		7
rs111893345	16:67607848	T/C	CTCF	intron	0.976	1.03521	0.0193	0.0729		7
rs111926533	16:67598967	T/C	CTCF	intron	0.967	1.03035	0.0241	0.2158		7
rs112095938	16:67604274	T/C	CTCF	intron	0.658	0.92849	0.0414	0.07281		7
rs112726101	16:67619785	C/G	CTCF	intron	0.974	0.97122	0.0240	0.2241		6
rs113231690	16:67616470	T/C	CTCF	intron	0.915	1.01796	0.0329	0.5886		7
rs113282006	16:67606882	A/G	CTCF	intron	0.965	1.03025	0.0241	0.2165		7
rs113577933	16:67636573	T/C	CTCF	intron	0.976	0.96069	0.0192	0.03683		7
rs113751961	16:67658146	A/G	CTCF	intron	0.652	0.92570	0.0504	0.125		7
rs113775720	16:67608839	T/C	CTCF	intron	0.970	1.03386	0.0240	0.1648		7
rs114137426	16:67653325	T/C	CTCF	intron	0.981	1.03572	0.0312	0.2599		7
rs114816906	16:67657545	A/G	CTCF	intron	0.976	0.96474	0.0312	0.2497		6
rs114984401	16:67647091	T/C	CTCF	intron	0.980	1.03562	0.0312	0.2626		7
rs115705813	16:67651426	T/C	CTCF	intron	0.980	0.96561	0.0312	0.2627		6
rs115868653	16:67654512	C/G	CTCF	intron	0.982	0.96532	0.0312	0.2574		6
rs116288601	16:67642935	T/C	CTCF	intron	0.975	1.03915	0.0312	0.218		6
rs117017165	16:67646311	A/G	CTCF	intron	0.995	1.07455	0.0259	0.005551		7
rs117256570	16:67631901	A/T	CTCF	intron	0.637	1.08437	0.0528	0.1249		6
rs117327757	16:67660940	T/C	CTCF	intron	0.647	1.02757	0.0286	0.3431		6
rs117370963	16:67659250	A/C	CTCF	intron	0.713	1.02286	0.0309	0.4649		7
rs117447021	16:67669455	A/G	CTCF	intron	0.953	1.08210	0.0275	0.00412		6
rs118116213	16:67661345	A/G	CTCF	intron	0.923	1.03200	0.0243	0.1953		6
rs118187571	16:67616809	T/C	CTCF	intron	0.861	0.91466	0.0476	0.0612		6
rs138191498	16:67598998	A/G	CTCF	intron	0.966	1.02757	0.0356	0.4441		-
rs138196841	16:67608171	T/G	CTCF	intron	0.906	0.95266	0.0468	0.2994		-
rs138572166	16:67635480	T/C	CTCF	intron	0.718	0.98728	0.0531	0.8087		-
rs139388147	16:67611601	T/C	CTCF	intron	0.707	0.98000	0.0199	0.3103		-
rs139952023	16:67665963	A/C	CTCF	intron	0.964	1.03852	0.0314	0.2283		-
rs140005335	16:67605878	A/G	CTCF	intron	0.613	0.91998	0.0540	0.1227		-
rs140418377	16:67643466	T/C	CTCF	intron	0.823	0.96060	0.0615	0.5135		-
rs140837060	16:67662815	A/T	CTCF	intron	0.972	1.08047	0.0263	0.003235		-
rs141206458	16:67612364	T/G	CTCF	intron	0.971	0.96628	0.0311	0.2704		-
rs141292841	16:67600549	T/G	CTCF	intron	0.974	1.03334	0.0313	0.2949		-
rs141586656	16:67611232	A/G	CTCF	intron	0.638	1.08448	0.0527	0.1239		-
rs142013216	16:67618053	T/C	CTCF	intron	0.716	0.98334	0.0530	0.7514		-
rs142790048	16:67637267	C/G	CTCF	intron	0.956	0.96638	0.0297	0.2502		-
rs143016310	16:67665080	T/G	CTCF	intron	0.903	0.94497	0.0256	0.02687		-
rs143241251	16:67669088	A/C	CTCF	intron	0.848	0.96474	0.0485	0.4589		-
rs143837268	16:67654677	T/C	CTCF	coding-synon	0.969	1.02819	0.0355	0.4337		-
rs143875179	16:67606308	A/G	CTCF	intron	0.987	1.07208	0.0261	0.007652		-
rs143912820	16:67609443	A/G	CTCF	intron	0.955	1.01593	0.0376	0.6746		-
rs144196392	16:67633110	C/G	CTCF	intron	0.993	0.93230	0.0259	0.006881		-
rs144238450	16:67638961	T/C	CTCF	intron	0.975	1.03056	0.0310	0.3327		-
rs145069501	16:67669901	A/G	CTCF	intron	0.790	0.93979	0.0449	0.167		-
rs145713894	16:67611048	A/G	CTCF	intron	0.979	1.03469	0.0312	0.2755		-
rs146287441	16:67670447	T/C	CTCF	intron	0.963	0.96156	0.0314	0.2123		-
rs146598431	16:67646396	T/G	CTCF	intron	0.994	1.07412	0.0259	0.005813		-
rs146703178	16:67629373	A/G	CTCF	intron	0.613	1.08687	0.0540	0.1232		-
rs146836745	16:67655247	C/G	CTCF	intron	0.704	1.06524	0.0588	0.2822		-
rs146837537	16:67602323	T/C	CTCF	intron	0.976	1.03365	0.0313	0.2905		-
rs147505593	16:67620046	A/G	CTCF	intron	0.737	1.00120	0.0280	0.9672		-
rs148170548	16:67665150	T/C	CTCF	intron	0.602	0.92302	0.0809	0.3218		-
rs149059545	16:67671828	T/C	CTCF	untranslated-3	0.683	1.09232	0.0596	0.1386		-
rs149220178	16:67668825	T/C	CTCF	intron	0.731	1.00713	0.0326	0.8266		-
rs149538057	16:67599150	T/C	CTCF	intron	0.884	1.01410	0.0587	0.8112		-
rs149769666	16:67670153	A/C	CTCF	intron	0.752	1.06535	0.0663	0.3394		-
rs16957489	16:67651879	A/G	CTCF	intron	0.983	1.05169	0.0158	0.001421		6
rs17686899	16:67627635	T/G	CTCF	intron	0.976	1.02932	0.0240	0.227		1f
rs184559737	16:67641639	A/G	CTCF	intron	0.738	0.92238	0.0517	0.1183		-
rs186273975	16:67636761	A/G	CTCF	intron	0.926	0.96831	0.0314	0.3042		-
rs186609714	16:67634662	T/C	CTCF	intron	0.639	1.04613	0.0459	0.3259		-
rs187241218	16:67611148	T/C	CTCF	intron	0.735	0.93838	0.0375	0.09011		-
rs190768098	16:67638307	A/G	CTCF	intron	0.893	1.02511	0.0583	0.6697		-
rs192018371	16:67608398	C/G	CTCF	intron	0.748	0.92719	0.0488	0.1214		-
rs28421035	16:67635751	T/C	CTCF	intron	0.979	1.03894	0.0191	0.04552		6
rs28711261	16:67617186	A/G	CTCF	intron	0.981	0.95028	0.0158	0.0013		7
rs34447959	16:67604353	C/G	CTCF	intron	0.783	0.93491	0.0294	0.02205		6
rs34523198	16:67607987	A/G	CTCF	intron	0.747	0.96387	0.0308	0.232		7
rs35482869	16:67598433	C/G	CTCF	intron	0.860	1.01177	0.0123	0.3406		5
rs35880507	16:67659259	A/G	CTCF	intron	0.679	0.99940	0.0433	0.9884		6
rs35960937	16:67623334	T/G	CTCF	intron	0.739	0.96618	0.0307	0.2626		6
rs36008260	16:67666095	T/G	CTCF	intron	0.700	0.98020	0.0341	0.5574		5
rs60626639	16:67625797	A/G	CTCF	intron	0.967	0.94743	0.0161	0.0008009		6
rs62059331	16:67603153	A/G	CTCF	intron	0.706	0.94781	0.0648	0.4079		6
rs62059334	16:67641816	A/G	CTCF	intron	0.739	0.96281	0.0559	0.4987		7
rs6499132	16:67601905	C/G	CTCF	intron	0.972	0.96580	0.0193	0.07161		7
rs6499133	16:67601980	T/C	CTCF	intron	0.870	1.03200	0.0304	0.3006		6
rs6499134	16:67611443	T/C	CTCF	intron	0.974	0.95180	0.0158	0.001728		7
rs6499135	16:67625872	T/G	CTCF	intron	0.868	0.96098	0.0115	0.0005124		7
rs6499137	16:67671804	T/G	CTCF	untranslated-3	0.959	0.96454	0.0195	0.06437		6
rs7185433	16:67633263	A/G	CTCF	intron	0.979	1.03915	0.0191	0.04442		7
rs73595580	16:67636767	A/G	CTCF	intron	0.936	1.03521	0.0198	0.08012		5
rs74708087	16:67623663	T/G	CTCF	intron	0.924	1.01765	0.0330	0.596		6
rs75760574	16:67644173	A/G	CTCF	intron	0.995	1.07455	0.0259	0.005515		6
rs75962241	16:67667853	A/G	CTCF	intron	0.932	1.02634	0.0252	0.3038		6
rs76616230	16:67663639	T/C	CTCF	intron	0.953	1.03811	0.0195	0.0551		6
rs76852168	16:67620683	A/G	CTCF	intron	0.981	0.96561	0.0312	0.2626		7
rs77172747	16:67605125	A/G	CTCF	untranslated-5	0.977	1.03396	0.0313	0.2851		5
rs77375566	16:67627054	A/G	CTCF	intron	0.975	1.02953	0.0240	0.2255		6
rs77487885	16:67652833	T/C	CTCF	intron	0.981	0.96551	0.0312	0.261		6
rs78239283	16:67636431	A/G	CTCF	intron	0.634	1.15142	0.0563	0.01222		7
rs78296252	16:67619747	T/G	CTCF	intron	0.735	0.97971	0.0172	0.2334		6
rs79148312	16:67598635	A/G	CTCF	intron	0.625	0.99035	0.0441	0.8252		7
rs79261677	16:67604830	T/C	CTCF	intron	0.971	1.03004	0.0241	0.2188		5
rs79628246	16:67655860	T/C	CTCF	intron	0.968	1.02901	0.0243	0.238		7
rs79868332	16:67619516	T/C	CTCF	intron	0.974	0.97122	0.0240	0.224		7
rs80190634	16:67660902	A/G	CTCF	intron	0.975	1.07918	0.0262	0.00368		5
rs8055358	16:67626194	A/G	CTCF	intron	0.802	1.01918	0.0160	0.2353		7
rs8061001	16:67627280	A/G	CTCF	intron	0.981	0.96512	0.0312	0.2546		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information