FANCL

Basic Information

Gene Symbol	FANCL
Entrez Id	55120
Position	chr2:58386378..58468515
Description	Fanconi anemia, complementation group L
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10178325	2:58414355	A/G	FANCL	intron	0.965	0.99511	0.0292	0.867		7
rs10445895	2:58390538	T/C	FANCL	intron	0.997	0.92312	0.0184	0.00001415		7
rs10445896	2:58390547	A/G	FANCL	intron	0.998	1.08491	0.0183	8.791E-6		7
rs10490253	2:58413694	T/C	FANCL	intron	1.000	1.00491	0.0295	0.8672		7
rs1100188	2:58416115	A/C	FANCL	intron	0.996	0.95142	0.0110	5.58E-6		7
rs1100189	2:58402481	C/G	FANCL	intron	0.920	1.04634	0.0111	0.00004305		6
rs1100190	2:58399905	C/G	FANCL	intron	0.988	0.95209	0.0113	0.0000135		7
rs1100191	2:58396220	A/G	FANCL	intron	0.997	1.05317	0.0109	2.263E-6		6
rs112109001	2:58404956	A/G	FANCL	intron	0.986	0.91998	0.0187	8.578E-6		6
rs112144223	2:58454947	T/C	FANCL	intron	0.850	0.98403	0.0556	0.772		7
rs112187740	2:58448272	T/C	FANCL	intron	0.993	0.97434	0.0190	0.1709		7
rs113506287	2:58438398	T/C	FANCL	intron	0.995	0.92090	0.0184	7.656E-6		5
rs114236282	2:58451659	A/C	FANCL	intron	0.934	0.99651	0.0404	0.931		7
rs114317045	2:58458319	A/G	FANCL	intron	0.671	0.96329	0.0487	0.4422		5
rs114680290	2:58424439	T/C	FANCL	intron	0.814	0.98738	0.0450	0.7772		6
rs114792936	2:58407166	T/C	FANCL	intron	0.998	0.99561	0.0296	0.8819		7
rs114954821	2:58418948	A/C	FANCL	intron	0.854	1.06513	0.0219	0.003937		7
rs115084101	2:58407055	A/C	FANCL	intron	1.010	0.94026	0.0174	0.000412		7
rs115324140	2:58425336	T/G	FANCL	intron	0.740	0.91888	0.0368	0.02143		6
rs115337726	2:58420932	T/C	FANCL	intron	0.628	1.00884	0.0599	0.8827		7
rs116052376	2:58458857	A/T	FANCL	intron	0.745	0.97064	0.0478	0.5333		7
rs116263038	2:58397666	A/T	FANCL	intron	0.680	0.94271	0.0547	0.2811		7
rs116694085	2:58418360	T/C	FANCL	intron	0.929	0.99990	0.0387	0.9969		6
rs11889211	2:58463541	A/G	FANCL	intron	0.998	1.03417	0.0138	0.01508		3a
rs11903212	2:58423312	T/C	FANCL	intron	1.000	0.94101	0.0173	0.0004561		7
rs11903456	2:58393836	T/C	FANCL	intron	0.999	1.00602	0.0125	0.6324		7
rs12469873	2:58398340	A/G	FANCL	intron	0.984	0.96735	0.0140	0.0179		5
rs12470316	2:58446509	T/C	FANCL	intron	0.996	0.99611	0.0113	0.7342		5
rs12474593	2:58446667	T/C	FANCL	intron	0.994	1.02388	0.0189	0.2114		5
rs12475594	2:58433375	A/G	FANCL	intron	0.982	0.97006	0.0138	0.02716		6
rs12476829	2:58427368	T/C	FANCL	intron	0.993	0.97404	0.0190	0.1662		6
rs12477242	2:58452792	C/G	FANCL	intron	0.987	1.05180	0.0113	8.195E-6		7
rs12624152	2:58390679	T/G	FANCL	intron	0.964	1.06386	0.0173	0.0003526		7
rs12988249	2:58465238	A/G	FANCL	intron	1.000	1.06194	0.0174	0.0005673		5
rs13006005	2:58423643	T/C	FANCL	intron	0.998	1.06290	0.0174	0.0004523		6
rs13023405	2:58415973	A/T	FANCL	intron	1.000	1.06375	0.0175	0.0004229		6
rs13032432	2:58425614	T/C	FANCL	intron	0.948	0.95810	0.0373	0.2508		7
rs13032851	2:58395670	T/C	FANCL	intron	1.000	1.06332	0.0174	0.0004293		6
rs13417865	2:58395533	C/G	FANCL	intron	0.997	0.99293	0.0296	0.8094		7
rs13418724	2:58450533	A/G	FANCL	intron	0.996	0.99860	0.0293	0.9607		6
rs13421853	2:58418005	T/C	FANCL	intron	0.991	1.00401	0.0292	0.89		7
rs13422760	2:58444950	A/C	FANCL	intron	1.010	1.06120	0.0173	0.0006164		6
rs139073468	2:58399832	T/C	FANCL	intron	0.872	0.96368	0.0339	0.2749		-
rs139182344	2:58397514	T/G	FANCL	intron	0.852	1.00160	0.0487	0.9731		-
rs140698680	2:58406313	A/G	FANCL	intron	0.990	1.00210	0.0291	0.9411		-
rs143710592	2:58391696	T/G	FANCL	intron	0.830	0.94914	0.0386	0.1764		-
rs144113658	2:58422521	T/G	FANCL	intron	0.930	1.07283	0.0462	0.1275		-
rs145482520	2:58406743	A/C	FANCL	intron	0.990	1.00210	0.0291	0.9411		-
rs146866155	2:58400389	A/T	FANCL	intron	0.998	1.00672	0.0295	0.8208		-
rs147891737	2:58454770	T/C	FANCL	intron	0.762	0.93735	0.0514	0.208		-
rs147963883	2:58414246	T/C	FANCL	intron	0.755	0.95801	0.0517	0.4065		-
rs149412402	2:58389969	C/G	FANCL	intron	0.919	0.88533	0.0564	0.03096		-
rs150218524	2:58402126	T/G	FANCL	intron	0.985	1.08719	0.0186	7.264E-6		-
rs150752804	2:58457432	A/C	FANCL	intron	0.939	0.99432	0.0397	0.8854		-
rs151009591	2:58406772	A/C	FANCL	intron	0.933	1.00361	0.0397	0.9268		-
rs151232851	2:58466551	T/C	FANCL	intron	0.608	1.09966	0.0568	0.09464		-
rs151281379	2:58419121	A/T	FANCL	intron	0.748	1.00200	0.0485	0.9665		-
rs17049394	2:58417817	A/G	FANCL	intron	0.992	1.01898	0.0188	0.317		7
rs17049396	2:58418501	A/G	FANCL	intron	0.991	1.00632	0.0291	0.829		6
rs17049403	2:58427786	A/C	FANCL	intron	0.993	1.00441	0.0290	0.8805		6
rs17049406	2:58429870	A/T	FANCL	intron	1.000	1.00652	0.0294	0.8245		5
rs17049408	2:58431129	T/C	FANCL	intron	1.000	1.00874	0.0293	0.7656		7
rs17049416	2:58441001	C/G	FANCL	intron	0.994	0.97629	0.0189	0.2048		7
rs17049417	2:58441542	A/G	FANCL	intron	0.994	1.02357	0.0189	0.2182		6
rs17049420	2:58449838	T/C	FANCL	intron	0.991	1.00270	0.0293	0.9276		7
rs17049422	2:58454060	T/C	FANCL	intron	0.993	0.99025	0.0295	0.7393		7
rs17049423	2:58461903	T/C	FANCL	intron	0.988	1.02368	0.0180	0.1941		6
rs181526368	2:58427763	A/C	FANCL	intron	0.781	0.99890	0.0564	0.984		-
rs181933795	2:58409184	T/C	FANCL	intron	0.824	0.98452	0.0636	0.806		-
rs181997869	2:58414562	C/G	FANCL	intron	0.645	1.08785	0.0506	0.09582		-
rs183970225	2:58444376	T/C	FANCL	intron	0.911	1.00120	0.0279	0.9669		-
rs184803941	2:58401101	A/G	FANCL	intron	0.989	1.00602	0.0290	0.835		-
rs185584249	2:58400641	T/C	FANCL	intron	0.998	1.00662	0.0295	0.8217		-
rs186882366	2:58438137	A/T	FANCL	intron	0.768	0.92275	0.0684	0.2398		-
rs187147242	2:58394758	A/T	FANCL	intron	0.891	1.05591	0.0515	0.2907		-
rs187263940	2:58440813	T/C	FANCL	intron	0.926	0.91567	0.0405	0.02967		-
rs187275051	2:58402164	A/T	FANCL	intron	1.010	0.93979	0.0174	0.0003532		-
rs190565723	2:58433414	T/C	FANCL	intron	0.781	1.00100	0.0564	0.9852		-
rs190961149	2:58446324	A/T	FANCL	intron	0.736	1.03035	0.0331	0.366		-
rs191453402	2:58444314	T/C	FANCL	intron	0.709	1.03169	0.0342	0.3624		-
rs192773819	2:58445061	A/T	FANCL	intron	0.705	0.92626	0.0597	0.1994		-
rs2098344	2:58413751	T/C	FANCL	intron	0.994	0.95925	0.0127	0.001036		6
rs2110664	2:58462731	A/C	FANCL	intron	0.996	0.99850	0.0117	0.8959		6
rs2691672	2:58405260	A/G	FANCL	intron	0.989	1.05253	0.0110	3.203E-6		7
rs28588526	2:58453585	T/C	FANCL	intron	0.992	1.00270	0.0294	0.9266		7
rs28668929	2:58455834	A/G	FANCL	intron	0.991	1.00682	0.0296	0.8191		6
rs34335951	2:58410361	A/G	FANCL	intron	1.010	1.06279	0.0174	0.0004509		7
rs34556232	2:58465927	T/C	FANCL	intron	1.000	0.94176	0.0174	0.0005731		5
rs35341336	2:58439643	A/G	FANCL	intron	0.990	1.07240	0.0183	0.0001366		6
rs35672834	2:58412537	T/C	FANCL	intron	0.974	1.01511	0.0260	0.563		7
rs35773188	2:58392490	A/T	FANCL	intron	1.000	1.06343	0.0174	0.000421		7
rs35925771	2:58437551	T/C	FANCL	intron	1.010	0.94007	0.0174	0.0003822		7
rs36000054	2:58398854	A/G	FANCL	intron	0.986	0.98196	0.0182	0.3179		7
rs3821211	2:58431709	A/T	FANCL	intron	0.987	1.03780	0.0231	0.1082		3a
rs3821212	2:58443598	A/T	FANCL	intron	1.000	0.95142	0.0154	0.001189		7
rs4672232	2:58402271	A/T	FANCL	intron	0.640	1.03200	0.0252	0.2104		6
rs58059919	2:58452654	A/G	FANCL	intron	0.992	0.99591	0.0294	0.8888		6
rs60176808	2:58452224	C/G	FANCL	intron	0.994	0.99213	0.0294	0.7871		6
rs62140034	2:58399124	C/G	FANCL	intron	0.998	1.00702	0.0295	0.8118		5
rs62140039	2:58419415	C/G	FANCL	intron	0.976	0.99760	0.0393	0.9514		7
rs62140040	2:58421057	T/C	FANCL	intron	0.991	1.00421	0.0291	0.8861		6
rs62140041	2:58422053	T/C	FANCL	intron	0.991	1.00431	0.0291	0.8825		7
rs62140043	2:58429839	A/C	FANCL	intron	1.000	0.99223	0.0294	0.7904		5
rs62140045	2:58431446	T/C	FANCL	intron	1.000	1.00662	0.0294	0.8219		6
rs62140046	2:58435316	T/C	FANCL	intron	0.951	1.01572	0.0283	0.5815		7
rs62140047	2:58443958	T/C	FANCL	intron	0.999	1.00793	0.0295	0.7893		7
rs62140048	2:58447930	C/G	FANCL	intron	0.988	0.99601	0.0294	0.893		7
rs62140049	2:58448241	A/G	FANCL	intron	0.996	0.99611	0.0295	0.895		6
rs62140050	2:58448286	T/G	FANCL	intron	0.997	1.00461	0.0295	0.8762		7
rs62140051	2:58451353	A/G	FANCL	intron	0.995	1.00461	0.0295	0.8755		7
rs62141871	2:58455199	T/C	FANCL	intron	0.993	1.00924	0.0295	0.7546		6
rs6709460	2:58444610	C/G	FANCL	intron	0.991	1.05043	0.0110	7.169E-6		5
rs6717332	2:58446080	T/G	FANCL	intron	0.906	0.96512	0.0186	0.05646		6
rs6761301	2:58455672	A/C	FANCL	intron	0.991	1.00421	0.0111	0.7079		4
rs72618693	2:58421501	T/C	FANCL	intron	0.602	1.07176	0.0687	0.3137		7
rs72618694	2:58445910	T/C	FANCL	intron	0.985	1.05127	0.0113	9.655E-6		7
rs72618695	2:58462616	C/G	FANCL	intron	0.985	1.05285	0.0113	5.308E-6		7
rs72618696	2:58465027	T/C	FANCL	intron	0.985	1.05222	0.0113	6.773E-6		2b
rs72810363	2:58413039	A/G	FANCL	intron	0.968	0.96493	0.0206	0.08346		7
rs72810367	2:58417528	T/C	FANCL	intron	0.976	1.00200	0.0394	0.9587		7
rs72810371	2:58420528	T/C	FANCL	intron	0.990	1.00521	0.0290	0.8581		6
rs72810373	2:58426188	A/G	FANCL	intron	0.997	1.03241	0.0138	0.02126		6
rs72810375	2:58428256	A/G	FANCL	intron	1.000	0.99491	0.0294	0.8618		7
rs72810377	2:58428278	T/C	FANCL	intron	0.987	1.00612	0.0291	0.8344		7
rs72810378	2:58428318	A/G	FANCL	intron	1.000	1.00692	0.0294	0.8158		7
rs72810385	2:58445529	T/C	FANCL	intron	0.994	1.02388	0.0189	0.2114		7
rs72810393	2:58454591	C/G	FANCL	intron	0.933	0.99511	0.0257	0.85		7
rs72810394	2:58455109	A/G	FANCL	intron	0.988	0.97804	0.0180	0.2165		6
rs72810396	2:58455972	T/C	FANCL	intron	0.989	1.00190	0.0294	0.9475		7
rs72812352	2:58463680	A/T	FANCL	intron	0.992	0.97590	0.0190	0.1988		5
rs72812354	2:58467305	C/G	FANCL	intron	0.834	1.05770	0.0288	0.0512		7
rs7340157	2:58403625	T/C	FANCL	intron	0.906	0.92709	0.0205	0.0002235		7
rs74561078	2:58391857	A/T	FANCL	intron	0.969	0.91916	0.0213	0.00007816		6
rs74749607	2:58416749	A/G	FANCL	intron	0.917	0.89592	0.0463	0.01756		6
rs75205222	2:58408481	T/C	FANCL	intron	0.895	1.04530	0.0251	0.07774		7
rs75374007	2:58411616	T/G	FANCL	intron	0.884	1.04592	0.0241	0.06253		7
rs76305302	2:58457732	A/G	FANCL	intron	0.902	1.01359	0.0215	0.531		7
rs76540117	2:58445062	A/C	FANCL	intron	0.883	1.03128	0.0200	0.1242		7
rs76889506	2:58423755	T/C	FANCL	intron	0.701	0.91962	0.0597	0.1601		6
rs77274446	2:58445482	A/G	FANCL	intron	0.916	0.89655	0.0463	0.01836		7
rs77524104	2:58408886	T/C	FANCL	intron	0.785	0.97902	0.0464	0.6482		7
rs78035081	2:58410076	T/C	FANCL	intron	0.994	1.02388	0.0190	0.2142		7
rs78928766	2:58406068	T/C	FANCL	intron	0.995	0.95171	0.0156	0.001495		7
rs79064653	2:58452531	A/G	FANCL	intron	0.995	1.08556	0.0185	8.826E-6		7
rs79268223	2:58467210	T/C	FANCL	intron	0.997	0.91916	0.0185	4.997E-6		7
rs79405536	2:58441275	A/T	FANCL	intron	0.995	0.92192	0.0185	0.00001059		7
rs79572158	2:58458277	T/C	FANCL	intron	1.000	1.06194	0.0174	0.0005576		5
rs79578884	2:58401920	A/C	FANCL	intron	0.947	0.95590	0.0367	0.2187		7
rs79588315	2:58453930	A/G	FANCL	intron	0.996	0.92072	0.0185	7.66E-6		6
rs80099621	2:58462269	A/G	FANCL	intron	0.975	1.08459	0.0184	9.974E-6		5
rs80225324	2:58406540	A/G	FANCL	intron	0.985	0.99920	0.0290	0.9789		6
rs848278	2:58420885	A/G	FANCL	intron	0.979	1.05211	0.0112	5.621E-6		5
rs848279	2:58419649	A/C	FANCL	intron	0.995	0.95161	0.0110	6.099E-6		7
rs848280	2:58412472	T/C	FANCL	intron	0.999	1.04917	0.0110	0.00001182		6
rs848281	2:58409069	A/T	FANCL	intron	0.997	1.05317	0.0109	2.134E-6		6
rs848282	2:58408687	T/C	FANCL	intron	0.997	0.94971	0.0109	2.37E-6		7
rs848283	2:58407747	T/C	FANCL	intron	0.961	0.98255	0.0389	0.6516		7
rs848284	2:58439040	A/T	FANCL	intron	0.992	1.05369	0.0110	1.85E-6		7
rs848285	2:58395281	T/G	FANCL	intron	0.997	1.05085	0.0112	0.00001039		7
rs848286	2:58394543	T/C	FANCL	intron	0.998	1.05012	0.0110	8.349E-6		6
rs848287	2:58393911	T/C	FANCL	intron	0.995	0.95056	0.0113	6.955E-6		6
rs848288	2:58392789	T/C	FANCL	intron	0.995	1.05085	0.0113	0.00001096		6
rs848289	2:58391570	A/T	FANCL	intron	0.993	1.05138	0.0113	9.12E-6		5
rs848290	2:58389182	A/T	FANCL	intron	0.946	1.05792	0.0224	0.01185		7
rs848291	2:58388696	A/G	FANCL	coding-synon,ncRNA	1.000	1.05096	0.0108	3.849E-6		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information