GABRA6

Basic Information

Gene Symbol	GABRA6
Entrez Id	2559
Position	chr5:161112658..161129598
Description	gamma-aminobutyric acid (GABA) A receptor, alpha 6
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs117234357	5:161121147	A/G	GABRA6	intron	0.985	1.01086	0.0380	0.776		7
rs11949158	5:161127234	A/G	GABRA6	intron	1.000	1.01167	0.0130	0.3742		6
rs11956731	5:161127822	T/C	GABRA6	intron	1.010	1.01298	0.0132	0.3282		6
rs11959228	5:161127111	A/G	GABRA6	intron	0.994	0.96021	0.0139	0.003499		7
rs13165944	5:161120538	T/C	GABRA6	intron	1.000	0.99840	0.0121	0.8947		6
rs13171954	5:161120411	A/C	GABRA6	intron	1.010	0.98817	0.0106	0.2624		6
rs13172914	5:161124464	T/C	GABRA6	intron	1.000	0.98669	0.0106	0.208		7
rs13184586	5:161119125	C/G	GABRA6	coding-synon	1.010	0.98817	0.0106	0.2618		7
rs13188991	5:161113004	A/G	GABRA6	coding-synon	0.965	1.02112	0.0123	0.08952		7
rs13190034	5:161120821	T/C	GABRA6	intron	1.000	0.98373	0.0110	0.1351		6
rs144677722	5:161111858	T/G	GABRA6	near-gene-5	0.814	0.92811	0.0661	0.259		-
rs17465486	5:161127876	T/C	GABRA6	intron	0.986	1.01888	0.0403	0.6429		7
rs186347663	5:161127271	A/G	GABRA6	intron	0.853	0.99920	0.0412	0.984		-
rs186891795	5:161112020	C/G	GABRA6	near-gene-5	0.781	0.95925	0.0553	0.4526		-
rs1992646	5:161111261	A/C	GABRA6	near-gene-5	1.000	0.98787	0.0106	0.2491		7
rs1992647	5:161111174	A/G	GABRA6	near-gene-5	0.999	1.01765	0.0109	0.1098		7
rs3219151	5:161128914	T/C	GABRA6	untranslated-3	1.000	1.01217	0.0106	0.2567		7
rs34907804	5:161128627	T/C	GABRA6	missense	0.995	1.01491	0.0210	0.4822		6
rs3811991	5:161128409	A/C	GABRA6	intron	1.000	0.98314	0.0110	0.1215		6
rs3811992	5:161116942	A/G	GABRA6	intron	1.010	0.98768	0.0106	0.2435		7
rs3811993	5:161116672	T/C	GABRA6	missense	0.794	0.95437	0.0540	0.387		7
rs3811995	5:161112693	T/C	GABRA6	untranslated-5	1.000	1.01177	0.0106	0.2699		7
rs41275315	5:161113492	A/T	GABRA6	intron	1.010	1.01187	0.0131	0.3706		6
rs41311631	5:161117041	T/C	GABRA6	intron	1.000	1.01613	0.0212	0.4491		6
rs4921195	5:161111588	T/C	GABRA6	near-gene-5	0.997	1.04164	0.0139	0.003438		7
rs62381630	5:161126670	A/G	GABRA6	intron	1.000	0.98778	0.0106	0.2488		7
rs6556558	5:161125325	T/C	GABRA6	intron	1.000	0.98364	0.0110	0.132		7
rs6556559	5:161125546	T/G	GABRA6	intron	1.000	1.01207	0.0106	0.2569		6
rs6865042	5:161129836	A/G	GABRA6	near-gene-3	1.000	0.98364	0.0110	0.1318		7
rs6879618	5:161121999	T/C	GABRA6	intron	0.995	1.01633	0.0116	0.161		7
rs6883758	5:161130045	C/G	GABRA6	near-gene-3	0.997	1.04123	0.0139	0.003681		7
rs6883829	5:161122848	C/G	GABRA6	intron	1.000	1.01664	0.0110	0.1327		6
rs6898571	5:161128019	T/C	GABRA6	intron	0.997	0.98432	0.0115	0.1721		7
rs72815526	5:160976104	T/G	GABRA6	near-gene-5	0.979	0.98916	0.0116	0.3483		5
rs72817422	5:161126271	T/C	GABRA6	intron	0.997	0.96041	0.0139	0.003745		7
rs73307565	5:161119877	T/G	GABRA6	intron	1.000	1.01471	0.0210	0.4853		7
rs73307576	5:161120835	T/C	GABRA6	intron	0.979	0.98629	0.0209	0.5086		6
rs75213195	5:161112050	A/T	GABRA6	near-gene-5	0.614	1.03852	0.0390	0.333		7
rs75844305	5:161123009	A/T	GABRA6	intron	0.835	1.05485	0.0474	0.2601		7
rs76060800	5:161123507	A/G	GABRA6	intron	0.997	1.01521	0.0212	0.4761		6
rs77243557	5:161123013	A/C	GABRA6	intron	1.010	1.01015	0.0132	0.447		7
rs79802786	5:161118630	A/G	GABRA6	intron	0.942	1.00230	0.0330	0.944		6
rs80044814	5:161123787	T/C	GABRA6	intron	0.997	1.01521	0.0212	0.4763		7
rs9313892	5:161110992	A/G	GABRA6	near-gene-5	0.997	0.96002	0.0139	0.003433		7
rs9688198	5:161127749	A/G	GABRA6	intron	1.010	0.98699	0.0132	0.3198		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information