GAD1

Basic Information

Gene Symbol	GAD1
Entrez Id	2571
Position	chr2:171673200..171717661
Description	glutamate decarboxylase 1 (brain, 67kDa)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10191129	2:171688593	C/G	GAD1	intron	0.991	0.97006	0.0126	0.01553		7
rs10930441	2:171683027	A/G	GAD1	intron	0.801	0.99980	0.0382	0.9953		7
rs116027735	2:171711781	T/C	GAD1	intron	0.977	1.03221	0.0416	0.4471		7
rs116247843	2:171683111	T/C	GAD1	intron	0.987	1.03593	0.0416	0.3958		5
rs117559799	2:171684715	T/C	GAD1	intron	0.769	0.96464	0.0436	0.4087		5
rs11890416	2:171691723	A/T	GAD1	intron	0.981	0.99432	0.0124	0.6419		6
rs11895404	2:171691729	A/G	GAD1	intron	0.980	1.00914	0.0127	0.4716		6
rs12612498	2:171682219	A/G	GAD1	intron	0.799	1.00070	0.0382	0.9861		5
rs13000989	2:171682799	A/G	GAD1	intron	0.967	0.98955	0.0109	0.3342		6
rs13014614	2:171684722	A/G	GAD1	intron	0.732	1.02922	0.0407	0.48		5
rs13033900	2:171697705	A/T	GAD1	intron	0.973	1.01847	0.0108	0.09085		7
rs13035478	2:171684383	T/G	GAD1	intron	0.888	1.04196	0.0305	0.1787		4
rs139063833	2:171681170	T/C	GAD1	intron	0.984	1.03448	0.0417	0.4169		-
rs143403108	2:171718131	A/G	GAD1	near-gene-3	0.924	0.96938	0.0438	0.4778		-
rs144119965	2:171690291	A/G	GAD1	intron	0.991	1.03210	0.0412	0.4422		-
rs147996714	2:171712674	T/C	GAD1	intron	0.974	0.96880	0.0418	0.4475		-
rs1548902	2:171678883	A/G	GAD1	intron	0.886	1.02337	0.0560	0.6802		2b
rs16858977	2:171701764	C/G	GAD1	intron	0.998	1.00371	0.0116	0.7492		7
rs16858988	2:171702960	A/G	GAD1	intron	0.993	0.98787	0.0127	0.3361		5
rs17752543	2:171714520	A/C	GAD1	intron	0.907	1.00672	0.0336	0.8422		7
rs182471681	2:171688146	A/G	GAD1	intron	0.846	1.00582	0.0131	0.6612		-
rs185774784	2:171691102	A/T	GAD1	intron	0.991	1.03210	0.0412	0.4428		-
rs190204904	2:171688144	A/G	GAD1	intron	0.817	0.98699	0.0282	0.6433		-
rs2058725	2:171690121	T/C	GAD1	intron	0.994	0.97006	0.0126	0.01544		6
rs2160414	2:171682346	T/C	GAD1	intron	0.986	1.03552	0.0417	0.4024		5
rs2241164	2:171686559	T/C	GAD1	intron	0.988	1.00743	0.0112	0.5117		6
rs2241165	2:171678379	T/C	GAD1	intron	0.965	0.97132	0.0124	0.01928		5
rs2270334	2:171675381	A/G	GAD1	intron	0.960	1.03004	0.0124	0.01735		5
rs2270335	2:171674696	T/C	GAD1	intron	0.960	1.03015	0.0124	0.01686		4
rs2302659	2:171700359	T/C	GAD1	intron	1.000	0.99253	0.0119	0.532		4
rs34210682	2:171676951	A/G	GAD1	intron	0.887	0.97550	0.0562	0.6587		4
rs3791850	2:171708100	A/G	GAD1	intron	0.987	1.02922	0.0126	0.02244		6
rs3791851	2:171698672	T/C	GAD1	intron	0.994	1.00702	0.0119	0.5561		6
rs3791853	2:171695070	A/G	GAD1	intron	0.973	0.97210	0.0294	0.3363		6
rs3791854	2:171690824	A/G	GAD1	intron	0.987	0.98778	0.0126	0.331		6
rs3791856	2:171689970	A/G	GAD1	intron	0.987	1.01258	0.0126	0.3236		6
rs3791857	2:171689850	A/C	GAD1	intron	0.987	1.00894	0.0123	0.4703		7
rs3791858	2:171689720	T/G	GAD1	intron	0.987	0.98817	0.0126	0.345		7
rs3791859	2:171689636	C/G	GAD1	intron	0.992	0.97210	0.0126	0.02506		5
rs3791860	2:171689421	C/G	GAD1	intron	0.973	1.01603	0.0106	0.1361		4
rs3791861	2:171689363	A/G	GAD1	intron	0.984	0.98847	0.0126	0.3555		4
rs3791862	2:171683758	A/C	GAD1	intron	0.838	1.03697	0.0446	0.4159		7
rs3791864	2:171682339	T/C	GAD1	intron	0.833	1.03541	0.0444	0.433		5
rs3791865	2:171680715	T/C	GAD1	intron	0.810	1.04446	0.0430	0.3122		5
rs3791866	2:171680587	C/G	GAD1	intron	0.941	1.00361	0.0110	0.7425		2b
rs3791867	2:171680562	T/G	GAD1	intron	0.916	0.99780	0.0113	0.8485		2b
rs3791868	2:171680561	C/G	GAD1	intron	0.916	0.99790	0.0113	0.8489		2b
rs3791869	2:171680080	A/G	GAD1	intron	0.911	0.99760	0.0111	0.8267		4
rs3791870	2:171680042	A/G	GAD1	intron	0.928	1.00421	0.0110	0.7011		4
rs3791871	2:171679655	A/G	GAD1	intron	0.949	0.98049	0.0118	0.095		4
rs3791872	2:171679515	A/G	GAD1	intron	0.953	0.98000	0.0118	0.08719		2b
rs3791873	2:171679329	C/G	GAD1	intron	0.796	1.04310	0.0430	0.3263		4
rs3791874	2:171677223	A/C	GAD1	intron	0.954	0.99432	0.0109	0.601		5
rs3791875	2:171676799	A/C	GAD1	intron	0.917	0.96339	0.0297	0.2091		4
rs3791876	2:171676768	T/C	GAD1	intron	0.750	1.04321	0.0426	0.3211		4
rs3791877	2:171675995	A/G	GAD1	intron	0.785	1.04039	0.0428	0.3548		5
rs3828274	2:171683668	A/G	GAD1	intron	0.825	1.04050	0.0452	0.3793		5
rs3828275	2:171682740	T/C	GAD1	intron	0.972	0.99134	0.0108	0.4209		7
rs41265947	2:171700904	T/C	GAD1	intron	0.882	1.07347	0.0487	0.1448		6
rs41311313	2:171702487	T/C	GAD1	intron	0.702	1.11505	0.0607	0.07255		6
rs41393845	2:171677752	T/C	GAD1	intron	0.983	1.03448	0.0419	0.4183		2b
rs41464547	2:171715066	T/G	GAD1	intron	0.909	0.98128	0.0286	0.5091		6
rs45465192	2:171679654	A/T	GAD1	intron	0.983	0.96676	0.0418	0.4183		4
rs45467694	2:171709999	T/C	GAD1	intron	0.940	1.03645	0.0407	0.3784		5
rs45471500	2:171709507	T/C	GAD1	intron	0.986	0.96899	0.0413	0.4459		6
rs45473292	2:171678269	A/G	GAD1	intron	0.940	1.04206	0.0409	0.3139		5
rs45477995	2:171694165	T/G	GAD1	intron	0.893	0.99045	0.0321	0.7657		6
rs45501695	2:171714079	C/G	GAD1	intron	0.845	0.97580	0.0398	0.5384		7
rs45506192	2:171703677	T/C	GAD1	intron	0.990	1.03179	0.0412	0.4484		6
rs45555432	2:171703341	A/C	GAD1	intron	0.934	0.98167	0.0296	0.5322		7
rs45576034	2:171676765	T/C	GAD1	intron	0.718	1.05633	0.0455	0.2281		4
rs45626540	2:171695387	T/C	GAD1	intron	0.992	0.96899	0.0411	0.4432		6
rs4667661	2:171697564	T/C	GAD1	intron	0.991	1.03097	0.0411	0.4578		4
rs4668327	2:171691857	A/G	GAD1	intron	0.986	0.99223	0.0123	0.5227		6
rs4668328	2:171697525	A/G	GAD1	intron	0.936	1.02460	0.0399	0.5423		4
rs4668329	2:171697795	T/C	GAD1	intron	0.989	0.96996	0.0408	0.4553		6
rs4668330	2:171698041	T/C	GAD1	intron	0.991	0.96899	0.0412	0.4438		7
rs4668331	2:171706247	A/T	GAD1	intron	0.991	1.00743	0.0121	0.5418		6
rs57881147	2:171685497	C/G	GAD1	intron	0.982	1.00944	0.0121	0.4336		4
rs60418431	2:171696165	T/C	GAD1	intron	0.973	0.97521	0.0295	0.3949		6
rs60509185	2:171690275	A/G	GAD1	intron	0.987	0.98778	0.0126	0.331		6
rs60669389	2:171695850	T/C	GAD1	intron	0.973	0.97531	0.0295	0.3964		6
rs60836041	2:171717942	A/C	GAD1	near-gene-3	0.943	0.98600	0.0108	0.1924		7
rs62168454	2:171682134	T/C	GAD1	intron	0.954	0.97893	0.0122	0.08231		5
rs6433252	2:171690464	T/C	GAD1	intron	0.993	1.00451	0.0116	0.6974		7
rs701491	2:171702585	A/G	GAD1	intron	0.990	1.03169	0.0412	0.4494		7
rs72889272	2:171707886	A/C	GAD1	intron	0.807	0.97893	0.0460	0.6429		7
rs74263999	2:171707243	A/C	GAD1	intron	1.000	1.00793	0.0119	0.5105		7
rs76344572	2:171696683	T/C	GAD1	intron	0.854	0.98847	0.0373	0.7549		7
rs76710253	2:171712688	C/G	GAD1	intron	0.987	1.00813	0.0120	0.4987		6
rs769391	2:171709430	A/G	GAD1	intron	0.999	1.00491	0.0117	0.6753		5
rs769393	2:171709521	A/G	GAD1	intron	0.788	0.99870	0.0237	0.9577		7
rs769407	2:171693708	C/G	GAD1	intron	0.995	0.99392	0.0119	0.6105		7
rs769411	2:171693639	C/G	GAD1	intron	0.972	0.97599	0.0295	0.4093		7
rs77278358	2:171698251	C/G	GAD1	intron	0.881	0.98098	0.0154	0.2125		7
rs77394129	2:171706785	A/G	GAD1	intron	0.855	1.07832	0.0518	0.1457		7
rs77492508	2:171684287	T/C	GAD1	intron	0.629	1.00501	0.0450	0.9116		5
rs78225572	2:171692000	T/C	GAD1	intron	0.637	0.99372	0.0456	0.8897		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information