GATAD2A

Basic Information

Gene Symbol	GATAD2A
Entrez Id	54815
Position	chr19:19496642..19619741
Description	GATA zinc finger domain containing 2A
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10282	19:19619317	T/C	GATAD2A	untranslated-3	1.000	0.94195	0.0110	5.089E-8		4
rs10401193	19:19591066	A/G	GATAD2A	intron	1.000	0.95858	0.0134	0.001599		6
rs10402451	19:19608537	A/G	GATAD2A	intron	1.000	0.94120	0.0110	3.308E-8		5
rs10404728	19:19595014	T/C	GATAD2A	intron	1.000	1.04352	0.0134	0.00145		6
rs10405625	19:19579046	T/G	GATAD2A	intron	1.000	0.94064	0.0110	2.484E-8		5
rs10406278	19:19494725	A/C	GATAD2A	near-gene-5	0.996	1.05148	0.0146	0.0006039		7
rs10408401	19:19552624	T/C	GATAD2A	intron	0.869	0.94290	0.0121	1.084E-6		7
rs10408596	19:19512657	A/T	GATAD2A	intron	1.000	0.97619	0.0160	0.132		5
rs10408875	19:19503573	T/C	GATAD2A	intron	0.974	0.97814	0.0160	0.1693		6
rs10410664	19:19556651	A/G	GATAD2A	intron	1.000	1.06301	0.0110	2.624E-8		7
rs10412351	19:19604562	T/C	GATAD2A	intron	0.704	1.02675	0.0371	0.4769		5
rs10414830	19:19562332	T/C	GATAD2A	intron	1.000	1.06279	0.0110	2.984E-8		4
rs10415849	19:19505087	T/C	GATAD2A	intron	1.000	1.02388	0.0160	0.1392		6
rs10419912	19:19597055	A/G	GATAD2A	intron	1.000	1.06269	0.0110	3.09E-8		6
rs10424702	19:19508013	A/G	GATAD2A	intron	0.979	0.97307	0.0156	0.07997		7
rs1047361	19:19606634	A/G	GATAD2A	coding-synon	1.000	1.06247	0.0110	3.335E-8		5
rs111406374	19:19505990	A/G	GATAD2A	intron	0.799	1.08145	0.0392	0.04587		4
rs113070129	19:19580964	T/G	GATAD2A	intron	0.771	1.04687	0.0136	0.0007664		6
rs113586635	19:19527287	A/G	GATAD2A	intron	0.859	1.06247	0.0563	0.2819		5
rs113618911	19:19495078	T/G	GATAD2A	near-gene-5	0.856	1.09779	0.0559	0.09503		6
rs113702251	19:19541147	A/T	GATAD2A	intron	0.920	0.96339	0.0253	0.1401		6
rs113841472	19:19565482	T/G	GATAD2A	intron	1.000	0.94544	0.0144	0.00009868		7
rs113894650	19:19551795	T/C	GATAD2A	intron	0.784	0.94649	0.0215	0.01077		6
rs113920263	19:19511885	A/G	GATAD2A	intron	0.949	1.08069	0.0239	0.001171		6
rs113980591	19:19565357	A/G	GATAD2A	intron	1.000	1.05749	0.0144	0.0001069		7
rs114654432	19:19499370	A/G	GATAD2A	intron	0.863	1.05643	0.0575	0.34		4
rs11669204	19:19542452	A/G	GATAD2A	intron	0.874	1.02542	0.0307	0.4132		7
rs117131852	19:19499589	T/C	GATAD2A	intron	0.840	0.97541	0.0364	0.4945		3a
rs117315649	19:19577451	A/G	GATAD2A	intron	0.863	0.94535	0.0574	0.3274		5
rs12462698	19:19510363	C/G	GATAD2A	intron	0.990	0.92709	0.0227	0.0008422		7
rs12971734	19:19562253	T/C	GATAD2A	intron	0.995	1.07907	0.0226	0.0007737		4
rs12972397	19:19562349	A/G	GATAD2A	intron	1.000	1.04352	0.0134	0.001473		4
rs12975119	19:19550464	A/C	GATAD2A	intron	0.996	0.93951	0.0110	1.352E-8		7
rs12977524	19:19568244	A/G	GATAD2A	intron	0.998	0.95619	0.0134	0.000857		6
rs12983940	19:19516431	A/G	GATAD2A	intron,near-gene-5	0.940	1.04258	0.0141	0.003191		3a
rs138676145	19:19588499	C/G	GATAD2A	intron	0.786	0.92867	0.0560	0.1864		-
rs139570205	19:19610115	T/C	GATAD2A	intron	0.693	0.93782	0.0481	0.1816		-
rs140793616	19:19602465	T/C	GATAD2A	intron	0.891	1.01521	0.0597	0.8002		-
rs141555763	19:19520675	C/G	GATAD2A	intron	0.799	0.99471	0.0559	0.9245		-
rs142117037	19:19506253	C/G	GATAD2A	intron	0.853	1.08318	0.0239	0.0008256		-
rs145086824	19:19505111	A/G	GATAD2A	intron	0.771	0.95237	0.0437	0.2636		-
rs145844716	19:19583187	C/G	GATAD2A	intron	0.863	0.94535	0.0574	0.3275		-
rs147292290	19:19564673	A/G	GATAD2A	intron	1.010	0.94592	0.0144	0.0001071		-
rs148037950	19:19590022	T/C	GATAD2A	intron	0.845	1.01796	0.0559	0.75		-
rs149405555	19:19496828	T/C	GATAD2A	untranslated-5	0.791	1.01207	0.0373	0.7485		-
rs149577280	19:19572607	A/G	GATAD2A	intron	0.649	0.95600	0.0529	0.3947		-
rs150063568	19:19618999	T/C	GATAD2A	untranslated-3	0.630	0.96194	0.0543	0.4751		-
rs1529745	19:19517325	C/G	GATAD2A	intron	0.957	0.94356	0.0144	0.00005588		2b
rs1560687	19:19562902	A/G	GATAD2A	intron	1.010	1.05696	0.0144	0.0001142		5
rs17288409	19:19504167	T/C	GATAD2A	intron	0.997	0.95820	0.0134	0.001475		6
rs17684098	19:19584969	T/C	GATAD2A	intron,untranslated-5	0.647	0.95304	0.0458	0.2935		4
rs182065368	19:19510404	T/C	GATAD2A	intron	0.864	1.05422	0.0575	0.3587		-
rs183986780	19:19523264	A/G	GATAD2A	intron	0.729	1.01532	0.0550	0.7817		-
rs184937537	19:19510566	A/G	GATAD2A	intron	0.632	1.00491	0.0573	0.932		-
rs1858999	19:19497669	C/G	GATAD2A	intron	0.985	1.06311	0.0110	2.851E-8		4
rs187816889	19:19512287	T/G	GATAD2A	intron	0.851	0.94942	0.0570	0.3625		-
rs188552254	19:19517169	A/G	GATAD2A	intron	0.844	0.96696	0.0149	0.0241		-
rs2033481	19:19617134	A/G	GATAD2A	untranslated-3	0.994	1.07983	0.0226	0.000669		5
rs2060274	19:19543271	T/C	GATAD2A	intron	0.998	1.05781	0.0144	0.00009166		7
rs2060275	19:19536208	C/G	GATAD2A	intron	1.010	1.05770	0.0144	0.00009521		7
rs2082421	19:19606264	T/C	GATAD2A	intron	1.000	1.06205	0.0110	4.193E-8		6
rs2099333	19:19605963	T/C	GATAD2A	intron	1.000	1.04519	0.0134	0.0009912		7
rs2099334	19:19578450	A/G	GATAD2A	intron	1.000	0.94064	0.0110	2.471E-8		6
rs2163804	19:19575965	A/G	GATAD2A	intron,near-gene-5	0.999	1.04550	0.0134	0.0009356		5
rs2163805	19:19575945	A/G	GATAD2A	intron,near-gene-5	0.999	1.04550	0.0134	0.0009356		5
rs2288852	19:19605348	T/C	GATAD2A	intron	1.000	0.94111	0.0110	3.223E-8		4
rs2315610	19:19597240	T/C	GATAD2A	intron	1.000	0.94120	0.0110	3.478E-8		7
rs28478453	19:19531175	C/G	GATAD2A	intron	0.985	0.96098	0.0135	0.003276		7
rs28720066	19:19572220	T/G	GATAD2A	intron	1.000	1.02552	0.0160	0.1154		4
rs2905435	19:19495954	A/G	GATAD2A	near-gene-5	0.968	0.94092	0.0111	3.97E-8		2b
rs2916068	19:19516433	A/G	GATAD2A	intron,near-gene-5	0.935	0.94205	0.0114	1.705E-7		2a
rs2916069	19:19520358	A/G	GATAD2A	intron	0.993	0.93988	0.0110	1.749E-8		4
rs2916070	19:19524105	A/G	GATAD2A	intron	1.010	1.05612	0.0144	0.0001476		1f
rs2916072	19:19525712	A/G	GATAD2A	intron	1.010	1.05802	0.0144	0.00008853		6
rs2916073	19:19528324	T/G	GATAD2A	intron	0.994	0.93960	0.0110	1.483E-8		5
rs2916074	19:19530270	A/G	GATAD2A	intron	0.994	1.06418	0.0110	1.508E-8		1f
rs2916075	19:19530590	C/G	GATAD2A	intron	1.010	1.05802	0.0144	0.00008817		6
rs2965179	19:19512755	A/G	GATAD2A	intron	1.000	1.05696	0.0144	0.000117		4
rs2965181	19:19512317	T/C	GATAD2A	intron	1.000	1.05739	0.0144	0.0001048		6
rs2965182	19:19548246	A/G	GATAD2A	intron	0.994	0.93960	0.0110	1.458E-8		6
rs2965185	19:19525792	T/C	GATAD2A	intron	1.000	0.95266	0.0115	0.00002507		6
rs2965186	19:19497195	T/G	GATAD2A	intron	0.992	1.05813	0.0144	0.00008784		2b
rs2965187	19:19522970	A/T	GATAD2A	intron	0.974	1.07165	0.0129	8.751E-8		6
rs2965188	19:19522557	A/G	GATAD2A	intron	0.998	1.06311	0.0110	2.662E-8		7
rs34487417	19:19509701	T/C	GATAD2A	intron	1.000	1.05643	0.0144	0.0001389		7
rs34647936	19:19548239	T/G	GATAD2A	intron	0.992	0.95715	0.0133	0.00102		6
rs34667451	19:19617017	T/C	GATAD2A	untranslated-3	1.010	1.05654	0.0144	0.00013		5
rs35156688	19:19514029	T/G	GATAD2A	intron	0.990	1.07885	0.0227	0.0008143		4
rs36113815	19:19540183	T/C	GATAD2A	intron	0.989	1.08058	0.0226	0.0006223		5
rs3794990	19:19610030	A/G	GATAD2A	intron	1.000	0.94120	0.0110	3.308E-8		5
rs3794991	19:19610596	T/C	GATAD2A	intron	0.996	1.01532	0.0187	0.4165		5
rs3794993	19:19611550	A/C	GATAD2A	intron	1.000	1.06152	0.0110	5.408E-8		1f
rs4808198	19:19533630	T/C	GATAD2A	intron	0.999	0.93988	0.0110	1.767E-8		7
rs4808200	19:19554803	A/G	GATAD2A	intron	1.000	1.06396	0.0110	1.626E-8		1f
rs4808201	19:19555671	A/C	GATAD2A	intron	0.995	1.07875	0.0226	0.000811		3a
rs4808202	19:19568439	A/G	GATAD2A	intron	1.000	1.06322	0.0110	2.375E-8		7
rs4808203	19:19568659	T/C	GATAD2A	intron	1.000	0.93969	0.0110	1.497E-8		1b
rs4808204	19:19590721	A/G	GATAD2A	intron	1.010	0.94611	0.0144	0.0001142		5
rs4808950	19:19518889	A/G	GATAD2A	intron	0.990	0.95657	0.0134	0.0008938		6
rs4808951	19:19550306	C/G	GATAD2A	intron	1.010	0.94563	0.0144	0.0001011		7
rs4808955	19:19552413	T/C	GATAD2A	intron	0.995	0.94035	0.0110	2.495E-8		7
rs4808957	19:19567248	A/G	GATAD2A	intron,near-gene-5	0.999	0.94101	0.0110	3.109E-8		5
rs4808958	19:19571752	A/G	GATAD2A	intron	0.997	1.06599	0.0148	0.00001629		2b
rs4808959	19:19572108	T/G	GATAD2A	intron	0.996	0.93998	0.0110	1.733E-8		4
rs4808960	19:19574277	C/G	GATAD2A	intron,near-gene-5	0.999	1.04550	0.0134	0.0009291		5
rs4808961	19:19577215	C/G	GATAD2A	intron	0.972	0.94082	0.0110	2.84E-8		5
rs4808962	19:19579557	A/G	GATAD2A	intron	1.000	0.94857	0.0145	0.0002765		2b
rs4808963	19:19598213	A/G	GATAD2A	intron	0.977	1.07918	0.0223	0.0006286		4
rs4808964	19:19603692	A/C	GATAD2A	intron	1.000	1.06152	0.0110	5.678E-8		1f
rs58074958	19:19570555	C/G	GATAD2A	intron	1.010	1.05717	0.0144	0.0001079		4
rs60003758	19:19557353	A/G	GATAD2A	intron	1.000	0.95810	0.0134	0.00142		7
rs60321073	19:19499598	A/G	GATAD2A	intron	0.997	0.95762	0.0134	0.001282		2b
rs62136975	19:19495652	T/C	GATAD2A	near-gene-5	0.840	0.97550	0.0364	0.4952		6
rs62136979	19:19564765	C/G	GATAD2A	intron	0.874	1.02224	0.0400	0.5822		7
rs62137769	19:19588057	A/G	GATAD2A	intron	0.625	0.94516	0.0508	0.267		5
rs6511036	19:19582651	A/G	GATAD2A	intron	0.997	0.95705	0.0135	0.001158		5
rs6511038	19:19607564	A/C	GATAD2A	intron	1.000	0.94101	0.0110	3.106E-8		5
rs6909	19:19619542	A/G	GATAD2A	untranslated-3	1.000	0.94064	0.0110	2.524E-8		5
rs7256550	19:19580961	A/T	GATAD2A	intron	0.982	1.07444	0.0231	0.001857		6
rs7259773	19:19611774	A/G	GATAD2A	intron	0.920	1.03738	0.0253	0.1462		5
rs73002956	19:19578743	A/G	GATAD2A	intron	0.995	0.98600	0.0187	0.4525		6
rs73002960	19:19582992	T/C	GATAD2A	intron	0.998	1.02388	0.0160	0.14		5
rs74181134	19:19508138	A/G	GATAD2A	intron	0.990	1.07864	0.0227	0.0008423		7
rs74181137	19:19533880	A/G	GATAD2A	intron	0.993	0.92617	0.0226	0.0007037		7
rs74322277	19:19570428	A/G	GATAD2A	intron	0.768	1.04991	0.0435	0.2629		4
rs74604097	19:19499549	C/G	GATAD2A	intron	0.682	1.11060	0.0310	0.0007023		4
rs75582668	19:19569023	T/C	GATAD2A	intron	1.010	1.05717	0.0144	0.0001088		4
rs75667002	19:19592232	A/T	GATAD2A	intron	1.010	1.05717	0.0144	0.0001089		7
rs76761722	19:19557965	A/G	GATAD2A	intron	0.715	0.96541	0.0373	0.3461		2b
rs77157813	19:19598611	A/T	GATAD2A	intron	0.694	0.96909	0.0364	0.3891		4
rs78010159	19:19615905	T/C	GATAD2A	intron	1.010	1.05654	0.0144	0.0001279		5
rs78150994	19:19530210	C/G	GATAD2A	intron	0.659	1.13111	0.0402	0.002177		5
rs78565660	19:19560094	T/C	GATAD2A	intron	0.726	0.94667	0.0639	0.3906		6
rs79044428	19:19578376	A/G	GATAD2A	intron	0.650	1.01603	0.0416	0.702		7
rs79370636	19:19614289	A/G	GATAD2A	intron	1.010	1.05654	0.0144	0.0001283		4
rs79645953	19:19540715	T/C	GATAD2A	intron	0.654	1.01745	0.0409	0.6723		5
rs79850010	19:19555018	T/C	GATAD2A	intron	0.800	1.00471	0.0558	0.9335		5
rs79879961	19:19599742	C/G	GATAD2A	intron	0.642	0.99601	0.0375	0.9142		2b
rs79954596	19:19548643	T/G	GATAD2A	intron	0.992	0.97502	0.0158	0.1093		7
rs80200208	19:19554725	T/C	GATAD2A	intron	1.010	1.05770	0.0144	0.00009514		7
rs8105642	19:19558468	A/G	GATAD2A	intron	1.010	1.05760	0.0144	0.00009561		4
rs8110171	19:19560063	T/C	GATAD2A	intron	0.993	1.06003	0.0146	0.00006727		7
rs8110250	19:19559989	A/G	GATAD2A	intron	1.010	1.05760	0.0144	0.00009556		7
rs8111093	19:19505548	T/C	GATAD2A	intron	0.971	1.05728	0.0146	0.0001399		5
rs8182472	19:19539891	T/C	GATAD2A	intron,near-gene-5	1.000	0.97726	0.0160	0.1502		6
rs892021	19:19613480	T/C	GATAD2A	intron	1.000	0.94111	0.0110	3.197E-8		5
rs892022	19:19613381	A/G	GATAD2A	intron	0.992	1.06056	0.0110	8.904E-8		5
rs9917108	19:19572785	A/G	GATAD2A	intron	1.000	0.94064	0.0110	2.57E-8		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
22196331	GWAS	177 cases; 436 controls
Reference	Study type	Sample size

eQTL Information