GDPD3

Basic Information

Gene Symbol	GDPD3
Entrez Id	79153
Position	chr16:30116131..30124878
Description	glycerophosphodiester phosphodiesterase domain containing 3
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs12444415	16:30118345	T/C	GDPD3	intron	0.944	1.03355	0.0109	0.002381		6
rs142703434	16:30118229	A/G	GDPD3	intron	0.713	0.93800	0.0614	0.2978		-
rs61764618	16:30124847	T/C	GDPD3	ncRNA,untranslated-5	0.704	0.92904	0.0353	0.03728		4
rs62057756	16:30117253	A/G	GDPD3	intron	0.936	0.94952	0.0113	4.844E-6		7
rs62057758	16:30117277	C/G	GDPD3	intron	0.603	1.10927	0.0375	0.005721		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
19855392	Regional	4551 cases; 6391 controls
Reference	Study type	Sample size

eQTL Information