HSPD1

Basic Information

Gene Symbol	HSPD1
Entrez Id	3329
Position	chr2:198351308..198364998
Description	heat shock 60kDa protein 1 (chaperonin)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs11682567	2:198355153	T/G	HSPD1	intron	1.000	1.01248	0.0135	0.3577		6
rs17730989	2:198362524	T/C	HSPD1	intron	0.997	0.94592	0.0106	1.528E-7		1f
rs2340689	2:198361058	T/C	HSPD1	intron	1.000	0.99233	0.0137	0.5726		5
rs2340690	2:198360886	A/G	HSPD1	intron	1.000	1.01278	0.0135	0.3473		5
rs2564384	2:198356065	T/C	HSPD1	intron	0.995	1.05823	0.0106	9.822E-8		7
rs2565163	2:198354414	T/C	HSPD1	intron	0.998	1.07423	0.0111	1.311E-10		6
rs2605041	2:198358785	A/G	HSPD1	intron	0.644	0.91998	0.0284	0.003349		4
rs41265953	2:198351804	C/G	HSPD1	missense	0.662	0.91220	0.0378	0.01502		7
rs41265955	2:198352101	A/T	HSPD1	intron	0.676	1.05443	0.0306	0.08319		5
rs41265957	2:198352226	C/G	HSPD1	intron	0.715	0.89494	0.0469	0.01803		4
rs75268808	2:198357775	A/T	HSPD1	intron	0.690	0.85172	0.0609	0.008391		5
rs8539	2:198362018	T/C	HSPD1	coding-synon	0.998	1.07304	0.0111	2.397E-10		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information