HTR2A

Basic Information

Gene Symbol	HTR2A
Entrez Id	3356
Position	chr13:47407513..47471169
Description	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1002513	13:47454440	A/G	HTR2A	intron	1.000	0.99372	0.0132	0.6336		7
rs1033847	13:47469335	T/C	HTR2A	intron	0.993	0.96977	0.0243	0.2064		7
rs112193154	13:47433825	A/G	HTR2A	intron	0.646	0.94497	0.0274	0.03924		5
rs113919495	13:47421294	A/T	HTR2A	intron	0.850	1.03448	0.0393	0.3885		7
rs115353156	13:47458416	A/C	HTR2A	intron	0.995	0.99990	0.0276	0.9971		7
rs117047261	13:47455444	A/G	HTR2A	intron	0.746	0.93725	0.0551	0.2393		6
rs117222059	13:47406657	A/G	HTR2A	untranslated-3	0.887	0.98531	0.0378	0.6962		7
rs117230475	13:47466384	T/C	HTR2A	intron	0.853	1.00130	0.0432	0.9758		5
rs117388050	13:47452169	T/C	HTR2A	intron	0.921	1.08199	0.0355	0.02649		7
rs117527334	13:47462743	A/T	HTR2A	intron	0.727	1.05665	0.0631	0.3824		7
rs117589588	13:47438756	T/C	HTR2A	intron	0.949	1.04144	0.0342	0.2345		6
rs117645639	13:47460229	A/G	HTR2A	intron	0.745	1.06791	0.0550	0.2325		6
rs117874987	13:47454497	T/C	HTR2A	intron	0.833	1.01177	0.0320	0.714		7
rs118008930	13:47457294	A/G	HTR2A	intron	0.862	0.96522	0.0585	0.5457		7
rs11841433	13:47434733	T/C	HTR2A	intron	0.958	1.00110	0.0277	0.968		7
rs12584920	13:47465037	T/G	HTR2A	intron	0.999	1.01015	0.0132	0.4441		6
rs12876614	13:47463990	T/C	HTR2A	intron	1.000	0.99332	0.0132	0.6115		7
rs1328675	13:47441616	A/G	HTR2A	intron	0.997	1.01400	0.0117	0.2353		7
rs1328677	13:47441510	A/C	HTR2A	intron	0.997	0.98610	0.0117	0.2345		7
rs1328683	13:47458874	T/C	HTR2A	intron	1.000	1.00592	0.0121	0.6296		7
rs139895124	13:47458975	A/C	HTR2A	intron	0.698	0.94866	0.0454	0.2456		-
rs140288968	13:47441059	A/G	HTR2A	intron	0.969	1.01005	0.0445	0.8219		-
rs140506623	13:47447087	A/G	HTR2A	intron	0.606	0.98570	0.0623	0.8174		-
rs140950739	13:47451847	T/C	HTR2A	intron	0.661	1.07294	0.0553	0.2031		-
rs142017799	13:47438103	A/T	HTR2A	intron	0.948	1.01908	0.0460	0.6812		-
rs142388760	13:47420424	C/G	HTR2A	intron	0.872	0.98373	0.0518	0.7522		-
rs147807401	13:47440868	A/G	HTR2A	intron	0.966	1.04582	0.0572	0.4332		-
rs149887481	13:47407941	T/C	HTR2A	untranslated-3	0.636	0.99372	0.0599	0.9156		-
rs150648869	13:47433081	T/C	HTR2A	intron	0.613	0.99960	0.0317	0.9893		-
rs17068986	13:47416386	T/C	HTR2A	intron	0.977	0.98108	0.0150	0.2031		6
rs17069005	13:47424118	A/G	HTR2A	intron	0.875	1.01308	0.0183	0.4766		7
rs17287961	13:47437111	T/C	HTR2A	intron	0.971	1.01674	0.0155	0.2822		7
rs17288723	13:47457693	T/C	HTR2A	intron	0.984	0.98462	0.0151	0.3049		7
rs17360184	13:47446963	C/G	HTR2A	intron	0.923	0.98748	0.0209	0.5478		7
rs1805055	13:47469968	T/G	HTR2A	intron,missense	0.927	0.92756	0.0352	0.03241		7
rs185882226	13:47459194	T/C	HTR2A	intron	0.794	0.93707	0.0647	0.3145		-
rs187974397	13:47461430	A/C	HTR2A	intron	0.984	1.00592	0.0271	0.8276		-
rs192954532	13:47450638	A/G	HTR2A	intron	0.978	0.97492	0.0247	0.3041		-
rs2025296	13:47463819	A/G	HTR2A	intron	1.000	0.97765	0.0185	0.2223		7
rs2070036	13:47466950	T/G	HTR2A	intron	0.994	1.01704	0.0253	0.5057		6
rs2070037	13:47467070	T/C	HTR2A	intron	0.994	0.99581	0.0121	0.7315		5
rs2070039	13:47467195	A/T	HTR2A	intron	0.999	1.00743	0.0132	0.5783		5
rs2070040	13:47467626	A/G	HTR2A	intron	0.998	0.99890	0.0106	0.9158		6
rs2224721	13:47432154	T/G	HTR2A	intron	0.951	1.00431	0.0131	0.7446		7
rs2296973	13:47466781	T/G	HTR2A	intron	1.000	0.99352	0.0115	0.5722		7
rs2760339	13:47437652	A/G	HTR2A	intron	0.953	0.99362	0.0271	0.8138		6
rs2760341	13:47438135	A/G	HTR2A	intron	0.979	1.02953	0.0188	0.122		7
rs2760342	13:47438146	A/T	HTR2A	intron	0.990	0.97677	0.0190	0.2164		6
rs2760343	13:47438504	A/G	HTR2A	intron	0.993	0.97697	0.0190	0.2198		7
rs2760344	13:47438549	T/C	HTR2A	intron	0.993	0.97697	0.0190	0.2205		6
rs2760345	13:47438574	T/C	HTR2A	intron	0.994	0.97687	0.0190	0.2169		7
rs2760346	13:47438738	T/C	HTR2A	intron	0.994	1.02337	0.0190	0.2237		7
rs2760347	13:47439092	T/C	HTR2A	intron	0.994	0.97726	0.0190	0.2255		6
rs2760348	13:47457358	T/C	HTR2A	intron	1.010	1.00361	0.0215	0.8683		7
rs2760349	13:47458592	C/G	HTR2A	intron	0.998	1.00491	0.0121	0.6853		7
rs2770292	13:47435106	C/G	HTR2A	intron	0.967	1.00361	0.0137	0.7938		3a
rs2770293	13:47438974	T/C	HTR2A	intron	0.999	0.99631	0.0107	0.7288		5
rs2770294	13:47439793	T/C	HTR2A	intron	0.994	0.97756	0.0190	0.2327		7
rs2770295	13:47440070	C/G	HTR2A	intron	1.000	1.00391	0.0107	0.7141		7
rs2770296	13:47440560	T/C	HTR2A	intron	0.999	1.00010	0.0117	0.9934		4
rs2770297	13:47446665	T/C	HTR2A	intron	1.000	1.00150	0.0115	0.8945		7
rs2770298	13:47446847	T/C	HTR2A	intron	1.000	1.00080	0.0115	0.9438		7
rs2770301	13:47447710	T/C	HTR2A	intron	0.988	1.01187	0.0125	0.3466		7
rs2770302	13:47450435	A/T	HTR2A	intron	0.996	0.99571	0.0122	0.7219		6
rs2770304	13:47455365	T/C	HTR2A	intron	1.000	1.00441	0.0111	0.6932		6
rs3125	13:47408851	C/G	HTR2A	untranslated-3	0.991	1.01015	0.0154	0.5112		7
rs34420017	13:47443889	A/G	HTR2A	intron	1.000	1.00622	0.0132	0.6396		7
rs35906144	13:47444053	T/C	HTR2A	intron	0.996	1.00531	0.0132	0.6891		6
rs3803189	13:47408570	T/G	HTR2A	untranslated-3	0.992	1.01035	0.0153	0.5024		6
rs3945573	13:47454705	A/G	HTR2A	intron	1.010	1.00471	0.0215	0.8275		7
rs4090088	13:47447733	A/C	HTR2A	intron	0.961	1.00955	0.0109	0.3822		6
rs4941570	13:47439371	A/G	HTR2A	intron	0.992	0.98610	0.0108	0.194		3a
rs4941571	13:47452971	T/C	HTR2A	intron	1.000	1.00461	0.0122	0.7025		7
rs4941573	13:47464857	A/G	HTR2A	intron	1.000	0.98452	0.0107	0.146		7
rs4941574	13:47465074	T/G	HTR2A	intron	1.000	1.01603	0.0107	0.1389		6
rs4942578	13:47432610	T/G	HTR2A	intron	0.990	1.01025	0.0134	0.4467		7
rs4942579	13:47433844	C/G	HTR2A	intron	0.880	1.01461	0.0148	0.3289		5
rs4942582	13:47451320	A/G	HTR2A	intron	1.000	0.99025	0.0108	0.3627		6
rs4942583	13:47452887	C/G	HTR2A	intron	1.010	0.99521	0.0215	0.8243		7
rs4942584	13:47453197	A/G	HTR2A	intron	0.996	0.98629	0.0108	0.2007		7
rs4942587	13:47462800	A/G	HTR2A	intron	1.000	0.99501	0.0122	0.6799		6
rs58918321	13:47439730	T/G	HTR2A	intron	0.991	0.95964	0.0256	0.1076		7
rs61948307	13:47405736	A/G	HTR2A	untranslated-3	0.905	0.97629	0.0260	0.3542		4
rs61948313	13:47415276	A/C	HTR2A	intron	0.979	0.99382	0.0135	0.644		5
rs61948314	13:47415383	T/C	HTR2A	intron	0.972	0.98965	0.0155	0.5002		7
rs61948316	13:47431950	A/G	HTR2A	intron	0.838	1.00351	0.0139	0.7991		5
rs61948317	13:47433938	T/C	HTR2A	intron	0.895	0.96986	0.0252	0.2237		7
rs61948318	13:47439776	A/T	HTR2A	intron	0.995	0.99930	0.0123	0.9559		7
rs61948330	13:47449838	C/G	HTR2A	intron	0.986	1.02706	0.0246	0.2774		7
rs61948331	13:47450216	A/C	HTR2A	intron	0.991	1.00753	0.0135	0.578		6
rs61948333	13:47450786	T/C	HTR2A	intron	0.986	1.02542	0.0247	0.3088		6
rs61948334	13:47453013	T/C	HTR2A	intron	0.967	0.98580	0.0151	0.3455		6
rs61948335	13:47453635	A/G	HTR2A	intron	0.995	0.99293	0.0136	0.6001		6
rs61948337	13:47456475	A/G	HTR2A	intron	0.970	1.02819	0.0245	0.2566		6
rs61948338	13:47456974	A/T	HTR2A	intron	0.992	0.97395	0.0247	0.2847		6
rs61948340	13:47460442	T/G	HTR2A	intron	0.993	0.97258	0.0247	0.2604		7
rs61948341	13:47460740	T/C	HTR2A	intron	0.993	0.97249	0.0247	0.2584		7
rs61948342	13:47467104	A/C	HTR2A	intron	0.993	1.03128	0.0245	0.2092		5
rs6310	13:47470352	T/C	HTR2A	intron,untranslated-5	0.996	1.03904	0.0237	0.1053		7
rs6313	13:47469940	A/G	HTR2A	coding-synon,intron	1.000	1.01450	0.0107	0.1792		6
rs6561332	13:47419820	T/G	HTR2A	intron	0.982	1.00230	0.0112	0.8388		7
rs6561335	13:47433497	A/G	HTR2A	intron	0.853	1.00210	0.0132	0.8745		7
rs6561336	13:47448060	T/C	HTR2A	intron	0.998	1.01329	0.0108	0.2185		6
rs659734	13:47435283	A/G	HTR2A	intron	0.974	1.03087	0.0252	0.2275		6
rs666693	13:47446916	T/C	HTR2A	intron	1.000	0.99501	0.0136	0.7155		7
rs66847642	13:47437382	C/G	HTR2A	intron	0.986	0.97687	0.0191	0.2189		7
rs689099	13:47458670	A/G	HTR2A	intron	1.000	0.99432	0.0121	0.638		7
rs73175513	13:47433007	A/T	HTR2A	intron	0.827	0.95514	0.0616	0.4563		5
rs73175515	13:47436929	A/G	HTR2A	intron	0.958	0.99890	0.0272	0.9669		7
rs73175516	13:47437103	C/G	HTR2A	intron	0.984	0.97697	0.0191	0.2221		7
rs73175521	13:47450278	C/G	HTR2A	intron	0.983	0.99312	0.0275	0.802		6
rs73175526	13:47458810	A/G	HTR2A	intron	0.996	1.00050	0.0276	0.9864		6
rs73175527	13:47461638	A/G	HTR2A	intron	0.996	0.99980	0.0276	0.995		7
rs73175528	13:47463198	A/G	HTR2A	intron	0.996	0.99970	0.0276	0.9922		7
rs73175529	13:47463455	T/C	HTR2A	intron	0.996	0.99960	0.0276	0.9891		6
rs73175530	13:47463499	T/C	HTR2A	intron	0.996	1.00040	0.0276	0.9882		7
rs731778	13:47451779	T/C	HTR2A	intron	0.995	1.00160	0.0276	0.9527		6
rs731779	13:47452038	A/C	HTR2A	intron	0.994	0.99193	0.0135	0.5471		6
rs7323079	13:47432928	T/G	HTR2A	intron	0.964	1.02757	0.0244	0.2646		7
rs7323792	13:47456190	T/C	HTR2A	intron	1.000	1.00351	0.0121	0.7754		6
rs7324017	13:47406845	T/C	HTR2A	untranslated-3	0.997	0.99183	0.0128	0.5236		7
rs7324218	13:47406956	T/C	HTR2A	untranslated-3	0.981	0.99690	0.0197	0.8735		6
rs73475716	13:47431509	T/C	HTR2A	intron	0.841	0.99481	0.0204	0.798		7
rs73475737	13:47445755	A/T	HTR2A	intron	0.994	1.04123	0.0256	0.1141		5
rs73475748	13:47449565	T/G	HTR2A	intron	0.992	0.96108	0.0255	0.1196		7
rs73475757	13:47453801	A/G	HTR2A	intron	0.993	1.03749	0.0243	0.1302		6
rs74452468	13:47443803	T/C	HTR2A	intron	0.754	0.95868	0.0497	0.3952		7
rs74846842	13:47468412	A/G	HTR2A	intron	0.993	0.96793	0.0245	0.1843		2b
rs75028184	13:47468252	C/G	HTR2A	intron	0.992	0.96812	0.0245	0.1871		4
rs75907607	13:47416042	C/G	HTR2A	intron	0.970	1.01086	0.0155	0.4868		6
rs76115403	13:47458955	A/T	HTR2A	intron	0.671	0.97824	0.0518	0.6713		6
rs76226738	13:47418136	T/C	HTR2A	intron	0.782	0.99223	0.0451	0.8623		7
rs76703096	13:47416712	A/G	HTR2A	intron	0.750	1.03076	0.0329	0.3566		7
rs77945982	13:47446206	A/G	HTR2A	intron	0.991	1.00632	0.0218	0.7714		7
rs78025243	13:47443528	T/C	HTR2A	intron	0.990	0.95476	0.0258	0.07283		7
rs78054651	13:47455613	T/G	HTR2A	intron	0.992	0.97472	0.0247	0.2995		7
rs78278527	13:47467878	T/C	HTR2A	intron	0.995	0.95839	0.0244	0.08083		5
rs78344787	13:47445186	T/C	HTR2A	intron	0.986	0.99402	0.0219	0.7843		5
rs78652716	13:47440458	C/G	HTR2A	intron	0.763	1.03272	0.0473	0.4966		4
rs78967094	13:47441423	A/G	HTR2A	intron	0.982	0.98255	0.0154	0.2519		7
rs79089222	13:47455279	A/G	HTR2A	intron	0.992	0.97482	0.0247	0.3015		7
rs79375865	13:47415701	T/C	HTR2A	intron	0.870	1.01888	0.0509	0.7127		6
rs79684337	13:47431314	A/G	HTR2A	intron	0.802	0.92293	0.0393	0.04134		7
rs80298007	13:47461750	A/T	HTR2A	intron	0.976	0.98847	0.0276	0.6752		7
rs912127	13:47451286	T/C	HTR2A	intron	0.999	1.00391	0.0121	0.7496		7
rs9316233	13:47433355	C/G	HTR2A	intron	0.935	0.99671	0.0140	0.8125		7
rs9316235	13:47445703	A/G	HTR2A	intron	0.999	0.99870	0.0121	0.9132		7
rs9316236	13:47464268	T/C	HTR2A	intron	1.000	1.01603	0.0107	0.1379		6
rs9526237	13:47413143	A/C	HTR2A	intron	0.971	1.00321	0.0198	0.872		5
rs9526238	13:47417038	T/C	HTR2A	intron	0.865	1.01613	0.0319	0.6165		7
rs9526239	13:47431363	A/G	HTR2A	intron	0.846	1.00280	0.0117	0.8086		7
rs9526240	13:47431471	A/G	HTR2A	intron	0.833	1.00381	0.0140	0.7859		7
rs9526241	13:47437096	T/C	HTR2A	intron	0.691	0.99571	0.0523	0.9338		7
rs9526245	13:47445967	A/C	HTR2A	intron	0.999	1.00130	0.0121	0.9113		5
rs9526246	13:47449861	A/G	HTR2A	intron	0.998	1.01319	0.0108	0.2246		6
rs9534493	13:47418383	A/G	HTR2A	intron	0.839	0.98906	0.0168	0.5104		6
rs9534496	13:47431108	C/G	HTR2A	intron	0.831	1.00321	0.0140	0.818		7
rs9534501	13:47439976	T/C	HTR2A	intron	0.997	1.00020	0.0123	0.9845		7
rs9534502	13:47440419	C/G	HTR2A	intron	0.977	1.02552	0.0246	0.3058		3a
rs9534503	13:47441681	T/C	HTR2A	intron	0.978	0.97511	0.0246	0.3062		7
rs9534504	13:47442725	A/C	HTR2A	intron	0.995	1.01319	0.0108	0.2257		7
rs9534505	13:47460744	A/G	HTR2A	intron	1.010	0.96996	0.0196	0.1196		7
rs9534506	13:47461615	A/G	HTR2A	intron	0.993	0.97181	0.0247	0.2463		6
rs9534507	13:47461734	A/G	HTR2A	intron	0.985	1.02696	0.0243	0.2738		6
rs9534508	13:47463623	A/G	HTR2A	intron	0.985	1.03066	0.0244	0.2167		7
rs9534509	13:47464314	A/G	HTR2A	intron	0.994	1.03076	0.0244	0.215		6
rs9534510	13:47468309	T/G	HTR2A	intron	0.998	0.99193	0.0106	0.4418		4
rs9534511	13:47468580	T/C	HTR2A	intron	1.000	0.99144	0.0106	0.4158		4
rs9562684	13:47420412	A/C	HTR2A	intron	0.990	1.02153	0.0149	0.151		6
rs9562685	13:47421223	A/G	HTR2A	intron	0.991	0.97883	0.0149	0.1504		6
rs9562686	13:47434327	A/G	HTR2A	intron	0.771	0.99810	0.0435	0.9649		6
rs9562687	13:47452133	A/G	HTR2A	intron	0.995	1.00833	0.0136	0.5431		7
rs9562688	13:47452549	A/G	HTR2A	intron	0.995	1.00743	0.0136	0.586		7
rs9562689	13:47457919	T/C	HTR2A	intron	0.996	1.00884	0.0135	0.5126		7
rs9567735	13:47419204	A/G	HTR2A	intron	0.987	1.02041	0.0149	0.1748		7
rs9567736	13:47420983	A/G	HTR2A	intron	0.989	0.97951	0.0148	0.1626		5
rs9567737	13:47421266	T/C	HTR2A	intron	0.981	0.99154	0.0106	0.4259		7
rs9567743	13:47440800	T/C	HTR2A	intron	0.998	1.00000	0.0123	0.9998		5
rs9567745	13:47454600	T/C	HTR2A	intron	1.010	0.99531	0.0215	0.8265		6
rs9567746	13:47456548	A/G	HTR2A	intron	0.998	0.99144	0.0136	0.5279		6
rs9567747	13:47460614	A/G	HTR2A	intron	0.999	0.99452	0.0122	0.6509		6
rs9595552	13:47407430	T/G	HTR2A	untranslated-3	0.981	1.00381	0.0197	0.8452		6
rs985933	13:47455863	A/G	HTR2A	intron	1.000	0.99035	0.0108	0.3693		7
rs985934	13:47455725	A/G	HTR2A	intron	1.000	1.00995	0.0108	0.3577		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information