KDM4A

Basic Information

Gene Symbol	KDM4A
Entrez Id	9682
Position	chr1:44115797..44171189
Description	lysine (K)-specific demethylase 4A
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10789439	1:44123191	T/C	KDM4A	intron	1.010	0.99561	0.0107	0.6798		7
rs10789440	1:44123452	T/C	KDM4A	intron	0.985	1.00662	0.0108	0.5427		7
rs10789441	1:44130564	A/G	KDM4A	intron	0.993	0.91512	0.0193	4.252E-6		5
rs10789442	1:44140075	A/C	KDM4A	intron	0.993	1.03634	0.0113	0.001521		6
rs10789443	1:44146466	T/C	KDM4A	intron	0.980	0.99283	0.0107	0.5033		7
rs112301467	1:44114973	C/G	KDM4A	near-gene-5	0.997	1.09177	0.0193	5.156E-6		7
rs112476957	1:44118644	T/C	KDM4A	intron	0.904	0.98462	0.0199	0.4345		7
rs113688544	1:44151911	T/C	KDM4A	intron	0.967	0.95123	0.0126	0.00007682		7
rs113758528	1:44125146	T/C	KDM4A	intron	0.993	1.09823	0.0212	0.00001015		5
rs114361356	1:44161275	A/G	KDM4A	intron	0.954	1.04917	0.0350	0.1704		7
rs114437207	1:44126451	A/T	KDM4A	intron	0.834	1.00280	0.0683	0.9675		5
rs115819330	1:44132074	A/G	KDM4A	intron	0.961	1.01278	0.0275	0.6447		4
rs116324511	1:44161850	C/G	KDM4A	intron	0.857	0.88861	0.0483	0.01452		6
rs12041746	1:44118195	A/T	KDM4A	intron	0.992	0.91686	0.0193	6.529E-6		6
rs12042514	1:44118354	T/C	KDM4A	intron	0.933	0.91247	0.0207	9.471E-6		6
rs12142545	1:44127084	T/C	KDM4A	intron	0.972	0.99293	0.0109	0.5123		7
rs138653546	1:44114773	C/G	KDM4A	near-gene-5	0.829	0.93267	0.0539	0.1966		-
rs142156869	1:44122521	T/C	KDM4A	intron	0.943	1.06673	0.0405	0.1104		-
rs142684389	1:44133835	T/C	KDM4A	intron	0.758	0.98324	0.0481	0.725		-
rs142710744	1:44117176	T/C	KDM4A	intron	0.680	0.97863	0.0519	0.6774		-
rs143429872	1:44162173	T/C	KDM4A	intron	0.905	1.06673	0.0521	0.215		-
rs143480677	1:44158165	C/G	KDM4A	intron	0.761	1.00000	0.0531	0.9996		-
rs148713086	1:44122854	T/C	KDM4A	intron	0.895	1.08437	0.0390	0.03782		-
rs149544266	1:44137609	C/G	KDM4A	intron	0.897	1.10982	0.0729	0.1531		-
rs17401357	1:44153619	C/G	KDM4A	intron	0.998	0.95829	0.0116	0.0002281		5
rs182971804	1:44136899	A/C	KDM4A	intron	0.619	0.99770	0.0595	0.9692		-
rs184677647	1:44138315	A/G	KDM4A	intron	0.899	1.03655	0.0569	0.5279		-
rs186672960	1:44159432	A/G	KDM4A	intron	0.861	1.05781	0.0485	0.2469		-
rs191561845	1:44129495	C/G	KDM4A	intron	0.894	1.00321	0.0607	0.9579		-
rs1971342	1:44152189	A/G	KDM4A	intron	0.998	0.95801	0.0116	0.0002095		7
rs1973512	1:44128047	A/G	KDM4A	intron	0.949	1.04102	0.0122	0.0009492		7
rs2270972	1:44158129	C/G	KDM4A	intron	0.998	1.04331	0.0116	0.0002458		7
rs2274465	1:44121557	C/G	KDM4A	intron	0.996	1.04300	0.0111	0.0001612		6
rs2296757	1:44133028	A/G	KDM4A	intron	1.000	0.97560	0.0112	0.02685		7
rs35938849	1:44148078	A/G	KDM4A	intron	0.952	1.03272	0.0259	0.2137		7
rs36049844	1:44129604	T/C	KDM4A	intron	0.640	0.92858	0.0483	0.1252		7
rs3791033	1:44134077	T/C	KDM4A	intron	0.998	1.04060	0.0113	0.0004239		6
rs3791034	1:44145130	A/G	KDM4A	intron	0.993	1.04310	0.0113	0.0001895		5
rs3791035	1:44154479	C/G	KDM4A	intron	0.999	0.95801	0.0116	0.0002075		5
rs3791036	1:44155383	A/G	KDM4A	intron	0.999	1.04164	0.0116	0.0004562		5
rs3791037	1:44160058	A/G	KDM4A	intron	1.000	1.00200	0.0107	0.8491		6
rs3791038	1:44161980	A/G	KDM4A	intron	0.998	1.00150	0.0107	0.8853		7
rs3791039	1:44162907	A/G	KDM4A	intron	1.010	1.00060	0.0106	0.9545		7
rs3815268	1:44163886	T/G	KDM4A	intron	0.999	1.00030	0.0107	0.9782		7
rs3818536	1:44135231	T/C	KDM4A	intron	1.000	1.02542	0.0112	0.02455		6
rs4336891	1:44126440	A/G	KDM4A	intron	0.992	1.09363	0.0193	3.65E-6		5
rs4660256	1:44122393	C/G	KDM4A	intron	0.764	0.92293	0.0548	0.1434		7
rs4660257	1:44148168	T/C	KDM4A	intron	0.993	1.04530	0.0116	0.0001295		7
rs4660740	1:44148617	A/G	KDM4A	intron	0.967	1.05064	0.0126	0.00009277		7
rs489319	1:44131794	T/C	KDM4A	intron	0.999	0.96271	0.0113	0.0007435		7
rs509173	1:44123502	A/G	KDM4A	intron	0.997	0.95686	0.0121	0.0002694		7
rs513862	1:44114405	A/T	KDM4A	near-gene-5	0.984	1.04436	0.0121	0.0003443		2b
rs517191	1:44116466	A/G	KDM4A	intron	0.995	0.95916	0.0112	0.0001853		4
rs519357	1:44115022	A/G	KDM4A	near-gene-5	0.921	1.03790	0.0122	0.002191		7
rs607062	1:44133016	T/C	KDM4A	intron	1.000	1.03884	0.0119	0.001401		6
rs617521	1:44114199	T/G	KDM4A	near-gene-5	0.997	0.95628	0.0121	0.0002248		1f
rs61768371	1:44118406	A/G	KDM4A	intron	0.993	0.95887	0.0111	0.0001656		7
rs61768372	1:44123988	T/C	KDM4A	intron	0.996	0.95849	0.0112	0.0001431		7
rs61768373	1:44148499	C/G	KDM4A	intron	0.902	0.94007	0.0162	0.0001411		7
rs61768374	1:44151633	T/G	KDM4A	intron	0.997	1.04362	0.0116	0.0002236		6
rs61768375	1:44153132	T/C	KDM4A	intron	0.849	0.97015	0.0356	0.394		5
rs6429632	1:44127597	A/G	KDM4A	intron	0.989	1.00491	0.0107	0.6463		7
rs656131	1:44129099	T/C	KDM4A	intron	0.994	1.02840	0.0114	0.01419		7
rs660899	1:44117006	T/G	KDM4A	intron	0.995	0.95964	0.0111	0.0002183		5
rs6661350	1:44126708	T/C	KDM4A	intron	0.986	1.00170	0.0107	0.8758		5
rs6676215	1:44141449	T/C	KDM4A	intron	0.870	1.13928	0.0518	0.01183		7
rs6683825	1:44152288	A/G	KDM4A	intron	1.000	1.00090	0.0107	0.9309		7
rs6697354	1:44151015	T/G	KDM4A	intron	1.000	1.04175	0.0116	0.0004329		7
rs76017264	1:44126143	T/C	KDM4A	intron	0.968	1.10032	0.0199	1.477E-6		3a
rs79520699	1:44146354	T/C	KDM4A	intron	0.894	0.98255	0.0139	0.2048		7
rs9787076	1:44141149	A/C	KDM4A	intron	0.995	1.04091	0.0113	0.0003973		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information