LINC01004

Basic Information

Gene Symbol	LINC01004
Entrez Id	100216546
Position	chr7:104622194..104631612
Description	long intergenic non-protein coding RNA 1004
Gene type	ncRNA

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10232798	7:104632599	A/G	LINC01004	near-gene-5	0.926	1.01076	0.0259	0.6802		7
rs10276583	7:104623892	A/C	LINC01004	ncRNA	0.990	0.99581	0.0154	0.7825		4
rs11971732	7:104627874	T/C	LINC01004	ncRNA	0.972	1.01623	0.0158	0.307		7
rs11974928	7:104627873	A/G	LINC01004	ncRNA	0.972	1.01613	0.0158	0.3101		7
rs13230660	7:104651058	A/G	LINC01004	ncRNA	0.988	1.00511	0.0153	0.7401		6
rs140743324	7:104650962	A/C	LINC01004	near-gene-3	0.946	0.93156	0.0357	0.0471		-
rs144617629	7:104651814	A/G	LINC01004	ncRNA	0.767	0.88621	0.0635	0.05719		-
rs17777694	7:104629892	T/C	LINC01004	ncRNA	0.915	1.00904	0.0247	0.7159		5
rs2891761	7:104652168	T/C	LINC01004	ncRNA	0.993	1.00773	0.0153	0.6129		4
rs3173872	7:104625069	A/G	LINC01004	ncRNA	0.991	1.00391	0.0154	0.7979		3a
rs34558707	7:104631530	T/C	LINC01004	ncRNA	0.955	1.00421	0.0160	0.7937		6
rs3823752	7:104624626	T/C	LINC01004	ncRNA	0.997	1.06449	0.0110	1.494E-8		4
rs4730066	7:104622402	T/G	LINC01004	ncRNA	0.972	0.96416	0.0133	0.006112		5
rs62486616	7:104627904	C/G	LINC01004	ncRNA	0.759	0.94214	0.0508	0.2412		6
rs6976394	7:104632980	A/G	LINC01004	near-gene-5	1.000	0.94829	0.0107	7.21E-7		7
rs73184058	7:104630211	C/G	LINC01004	ncRNA	0.636	1.05033	0.0628	0.434		2b
rs74365863	7:104651557	C/G	LINC01004	ncRNA	0.792	1.03655	0.0322	0.2651		5
rs888086	7:104626690	A/G	LINC01004	ncRNA	1.000	1.05517	0.0107	5.469E-7		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information