LINC01551

Basic Information

Gene Symbol	LINC01551
Entrez Id	387978
Position	chr14:29241910..29264000
Description	long intergenic non-protein coding RNA 1551
Gene type	ncRNA

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs117579264	14:29241288	T/G	LINC01551	near-gene-5	0.750	1.11338	0.0424	0.01136		5
rs12888113	14:29256639	A/C	LINC01551	intron	0.882	0.96686	0.0192	0.07858		5
rs138260228	14:29256374	T/C	LINC01551	intron	0.767	1.06407	0.0552	0.2607		-
rs138547687	14:29258015	A/G	LINC01551	intron	0.896	1.00602	0.0558	0.9138		-
rs140391258	14:29249096	A/G	LINC01551	intron	0.772	0.93669	0.0551	0.2351		-
rs17114266	14:29243242	T/G	LINC01551	intron	0.919	1.00391	0.0119	0.7431		4
rs17114286	14:29257152	T/G	LINC01551	intron	0.906	1.02163	0.0201	0.2885		7
rs17114290	14:29257605	T/C	LINC01551	intron	0.901	1.02183	0.0202	0.2858		7
rs17114299	14:29259351	T/C	LINC01551	intron	0.896	0.98128	0.0203	0.3506		6
rs17114301	14:29259725	T/C	LINC01551	intron	0.893	0.98010	0.0203	0.3226		6
rs17882286	14:29245893	T/C	LINC01551	intron	0.911	0.97132	0.0209	0.1651		7
rs1950187	14:29244248	T/C	LINC01551	intron	0.920	0.99074	0.0113	0.4081		5
rs1950188	14:29250416	T/C	LINC01551	intron	0.971	1.01187	0.0137	0.3914		5
rs1950189	14:29250502	A/G	LINC01551	intron	0.971	1.01177	0.0137	0.3937		5
rs1950191	14:29261946	A/G	LINC01551	ncRNA	0.885	1.01796	0.0205	0.3861		5
rs1950192	14:29261974	T/C	LINC01551	ncRNA	0.850	0.98560	0.0121	0.2313		5
rs2038256	14:29249349	T/G	LINC01551	intron	0.976	0.98866	0.0137	0.408		5
rs34558305	14:29249726	T/C	LINC01551	intron	0.907	0.97113	0.0210	0.1621		5
rs35974621	14:29255550	A/G	LINC01551	intron	0.882	1.03272	0.0189	0.08838		5
rs3783295	14:29260980	T/C	LINC01551	intron	0.876	1.01369	0.0113	0.2293		5
rs71414080	14:29262813	T/C	LINC01551	ncRNA	0.748	1.04321	0.0229	0.06467		6
rs72669759	14:29250993	T/C	LINC01551	intron	0.732	1.00421	0.0379	0.9125		6
rs75194645	14:29243929	A/C	LINC01551	intron	0.831	0.99481	0.0244	0.8308		2b
rs75765513	14:29248425	A/G	LINC01551	intron	0.721	0.98778	0.0386	0.7493		6
rs76585171	14:29257668	T/C	LINC01551	intron	0.902	0.97932	0.0202	0.3013		7
rs76974283	14:29240395	C/G	LINC01551	near-gene-5	0.731	1.02183	0.0328	0.5102		5
rs78141632	14:29257692	A/T	LINC01551	intron	0.691	0.95849	0.0515	0.4102		5
rs78640311	14:29247384	A/T	LINC01551	intron,ncRNA	0.835	1.03531	0.0264	0.1898		4
rs960043	14:29262632	T/G	LINC01551	ncRNA	0.779	0.92044	0.0299	0.005556		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information