LRRC48

Basic Information

Gene Symbol	LRRC48
Entrez Id	83450
Position	chr17:17876127..17920203
Description	leucine rich repeat containing 48
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs11078408	17:17876011	A/G	LRRC48	near-gene-5	0.994	0.94582	0.0113	8.02E-7		4
rs11078409	17:17876296	C/G	LRRC48	intron,near-gene-5	0.978	0.94478	0.0114	5.968E-7		4
rs117361397	17:17878856	A/G	LRRC48	intron	0.957	0.99800	0.0294	0.9449		7
rs11870660	17:17877096	T/C	LRRC48	intron,near-gene-5	0.993	1.06046	0.0113	2.163E-7		7
rs28366007	17:17876217	A/G	LRRC48	near-gene-5,untranslated-5	0.915	1.03967	0.0370	0.2927		4
rs4299203	17:17878159	T/G	LRRC48	intron	0.992	0.94318	0.0113	2.506E-7		4
rs4321247	17:17878612	A/G	LRRC48	intron	0.989	0.94630	0.0111	6.458E-7		7
rs4471742	17:17877771	T/C	LRRC48	intron,near-gene-5	0.985	1.05591	0.0113	1.567E-6		5
rs9914127	17:17875836	A/T	LRRC48	near-gene-5	0.994	0.94601	0.0113	8.779E-7		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information