LSM1

Basic Information

Gene Symbol	LSM1
Entrez Id	27257
Position	chr8:38020857..38034026
Description	LSM1, U6 small nuclear RNA associated
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs111528122	8:38030031	T/C	LSM1	intron	0.727	1.08470	0.0548	0.1375		6
rs112665070	8:38025149	A/G	LSM1	intron	0.677	1.11672	0.0626	0.07791		6
rs12542153	8:38026108	T/C	LSM1	intron	0.738	0.96735	0.0297	0.2641		6
rs138824104	8:38025512	T/C	LSM1	intron	0.934	0.94999	0.0133	0.0001193		-
rs145151767	8:38025511	A/G	LSM1	intron	0.934	0.94999	0.0133	0.0001193		-
rs145368949	8:38029908	T/C	LSM1	intron	0.613	1.04123	0.0542	0.4562		-
rs145699114	8:38025745	T/C	LSM1	intron	0.680	1.02214	0.0504	0.6647		-
rs146323794	8:38021774	T/C	LSM1	intron	0.672	1.02163	0.0503	0.6705		-
rs16887236	8:38027519	A/G	LSM1	intron	0.991	1.01197	0.0180	0.5071		7
rs16887244	8:38031345	A/G	LSM1	intron	0.991	1.05527	0.0124	0.00001509		1f
rs2843738	8:38029708	C/G	LSM1	intron	0.994	0.95190	0.0113	0.0000123		1f
rs2843746	8:38022927	A/G	LSM1	intron	0.989	1.01288	0.0182	0.4834		7
rs2954117	8:38025701	A/G	LSM1	intron	0.951	0.99144	0.0182	0.6358		7
rs3015656	8:38027483	C/G	LSM1	intron	0.804	1.01898	0.0171	0.2718		7
rs61438198	8:38029696	A/C	LSM1	intron	0.938	0.97873	0.0193	0.2662		4
rs72643084	8:38026972	A/T	LSM1	intron	0.911	0.98580	0.0216	0.507		6
rs72643087	8:38029391	T/C	LSM1	intron	0.660	0.88285	0.0570	0.02886		4
rs75301334	8:38025875	A/G	LSM1	intron	0.606	1.01066	0.0354	0.7656		6
rs76873509	8:38021982	T/C	LSM1	intron	0.987	0.94734	0.0124	0.00001375		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information