MSANTD2

Basic Information

Gene Symbol	MSANTD2
Entrez Id	79684
Position	chr11:124636388..124670868
Description	Myb/SANT-like DNA-binding domain containing 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10466604	11:124653926	C/G	MSANTD2	intron,untranslated-3	0.919	0.92617	0.0140	4.37E-8		5
rs117307538	11:124645534	A/G	MSANTD2	intron,untranslated-5	0.966	0.92774	0.0327	0.02172		7
rs117539210	11:124656128	A/G	MSANTD2	intron	0.728	1.05612	0.0396	0.1677		6
rs12279730	11:124638326	T/C	MSANTD2	intron	0.970	1.07638	0.0319	0.02098		7
rs12281103	11:124658239	A/G	MSANTD2	intron	0.992	0.96793	0.0121	0.007166		7
rs12283429	11:124640271	T/C	MSANTD2	intron	0.999	1.08145	0.0135	6.59E-9		2a
rs12285508	11:124650853	T/C	MSANTD2	intron,near-gene-5	0.867	0.93697	0.0452	0.1496		6
rs12288037	11:124658337	T/C	MSANTD2	intron	0.996	1.03262	0.0122	0.008446		6
rs148969294	11:124657932	T/C	MSANTD2	intron	0.679	0.89110	0.0701	0.09989		-
rs150838045	11:124656736	T/C	MSANTD2	intron	0.627	0.89226	0.0672	0.08979		-
rs3016271	11:124668305	T/G	MSANTD2	intron	0.993	0.96841	0.0122	0.008175		7
rs35841132	11:124661569	T/C	MSANTD2	intron	0.771	0.97093	0.0255	0.2467		5
rs485469	11:124657183	T/C	MSANTD2	intron	0.998	1.03118	0.0122	0.01167		6
rs491060	11:124667351	T/C	MSANTD2	intron	0.994	1.03272	0.0121	0.008008		7
rs491158	11:124667374	A/C	MSANTD2	intron	0.992	0.96802	0.0121	0.007324		7
rs4936953	11:124658708	T/C	MSANTD2	intron	0.664	0.97590	0.0160	0.1262		5
rs60858712	11:124664145	A/T	MSANTD2	intron	0.956	0.97307	0.0179	0.1282		7
rs61910627	11:124639164	A/G	MSANTD2	intron	0.885	1.00060	0.0240	0.9801		6
rs61910629	11:124655628	A/G	MSANTD2	intron	0.615	1.02173	0.0281	0.4431		7
rs643227	11:124658968	T/C	MSANTD2	intron	0.996	0.96909	0.0122	0.009981		7
rs6590093	11:124640669	T/C	MSANTD2	intron	0.976	1.07853	0.0139	5.626E-8		6
rs6590094	11:124643836	T/C	MSANTD2	intron	1.000	0.92533	0.0134	7.835E-9		7
rs6590095	11:124643939	A/C	MSANTD2	intron	1.000	1.08091	0.0135	7.676E-9		7
rs66925099	11:124661906	A/G	MSANTD2	intron	0.954	0.97648	0.0177	0.1792		5
rs68065265	11:124657596	A/G	MSANTD2	intron	0.952	0.97677	0.0177	0.1854		7
rs68115513	11:124665139	T/G	MSANTD2	intron	0.957	0.97307	0.0179	0.1283		7
rs7112807	11:124642600	A/T	MSANTD2	intron	0.986	1.07853	0.0136	2.852E-8		7
rs7124686	11:124650484	A/G	MSANTD2	intron,near-gene-5	0.992	0.92321	0.0135	3.09E-9		7
rs7126463	11:124646163	A/C	MSANTD2	intron,untranslated-5	0.998	1.08166	0.0135	5.45E-9		6
rs73010502	11:124665193	A/G	MSANTD2	intron	0.952	0.97746	0.0202	0.2602		5
rs73031459	11:124636645	A/G	MSANTD2	untranslated-3	0.638	1.01990	0.0398	0.6204		7
rs74535421	11:124641983	T/C	MSANTD2	intron	0.790	0.88878	0.0562	0.03605		7
rs77406987	11:124661038	A/G	MSANTD2	intron	0.719	0.90267	0.0350	0.003481		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information