NAGA

Basic Information

Gene Symbol	NAGA
Entrez Id	4668
Position	chr22:42454338..42466846
Description	N-acetylgalactosaminidase, alpha-
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs117826003	22:42455180	A/G	NAGA	untranslated-3	0.919	0.95047	0.0349	0.1451		7
rs133368	22:42463689	T/C	NAGA	intron	1.000	0.94261	0.0113	1.873E-7		1f
rs133374	22:42465941	A/G	NAGA	intron,near-gene-5	1.000	1.05823	0.0113	5.576E-7		4
rs133375	22:42466509	C/G	NAGA	intron,near-gene-5,untranslated-5	1.000	0.94441	0.0113	4.263E-7		1b
rs150015348	22:42459913	A/C	NAGA	intron	0.766	1.01521	0.0347	0.6638		-
rs2413666	22:42459622	T/C	NAGA	intron	0.995	1.05760	0.0113	7.681E-7		6
rs62238588	22:42455248	T/C	NAGA	untranslated-3	0.912	0.99501	0.0192	0.7936		7
rs73167109	22:42464645	T/C	NAGA	intron,near-gene-5	0.897	0.95437	0.0540	0.3873		6
rs77920989	22:42461088	T/C	NAGA	intron	0.915	1.04310	0.0364	0.2467		4
rs78010544	22:42457550	C/G	NAGA	intron	0.932	0.96483	0.0245	0.1437		7
rs9620018	22:42461187	T/C	NAGA	intron	0.876	0.95495	0.0214	0.03175		1f
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information