| Gene Symbol | PCDHA1 |
|---|---|
| Entrez Id | 56147 |
| Position | chr5:140165876..140391929 |
| Description | protocadherin alpha 1 |
| Gene type | protein-coding |
| SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
|---|---|---|---|---|---|---|---|---|---|---|
| rs10073974 | 5:140165231 | T/C | PCDHA1 | near-gene-5 | 1.000 | 1.05148 | 0.0105 | 1.714E-6 |  | 6 |
| rs115085380 | 5:140166686 | C/G | PCDHA1 | missense | 0.705 | 1.10484 | 0.0641 | 0.12 | | 5 |
| rs12055222 | 5:140165568 | T/C | PCDHA1 | near-gene-5 | 1.000 | 1.05169 | 0.0105 | 1.559E-6 | | 1f |
| rs1548699 | 5:140164918 | T/C | PCDHA1 | near-gene-5 | 1.000 | 1.05169 | 0.0105 | 1.585E-6 | | 6 |
| rs1548700 | 5:140164889 | A/T | PCDHA1 | near-gene-5 | 1.000 | 1.05169 | 0.0105 | 1.585E-6 | | 6 |
| rs1548701 | 5:140164557 | T/C | PCDHA1 | near-gene-5 | 1.000 | 1.05169 | 0.0105 | 1.571E-6 | | 6 |
| SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
| score | supporting data | score | supporting data |
|---|---|---|---|
| 1a | eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak | 6 | other |
| 2a | TF binding + matched TF motif + matched DNase Footprint + DNase peak | 5 | TF binding or DNase peak |
| 1b | eQTL + TF binding + any motif + DNase Footprint + DNase peak | 4 | TF binding + DNase peak |
| 2b | TF binding + any motif + DNase Footprint + DNase peak | 3b | TF binding + matched TF motif |
| 1c | eQTL + TF binding + matched TF motif + DNase peak | 1f | eQTL + TF binding / DNase peak |
| 2c | TF binding + matched TF motif + DNase peak | 3a | TF binding + any motif + DNase peak |
| 1d | eQTL + TF binding + any motif + DNase peak | 1e | eQTL + TF binding + matched TF motif |
The gene is not affected by CNV!
