PGBD1

Basic Information

Gene Symbol	PGBD1
Entrez Id	84547
Position	chr6:28249314..28270326
Description	piggyBac transposable element derived 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1062169	6:28270251	A/G	PGBD1	untranslated-3	1.010	0.97035	0.0163	0.06493		7
rs114972842	6:28259505	A/G	PGBD1	intron	0.817	0.96986	0.0321	0.3399		7
rs11755032	6:28255277	T/C	PGBD1	intron	1.000	1.01654	0.0250	0.5113		5
rs11757730	6:28259533	A/G	PGBD1	intron	1.000	0.97590	0.0154	0.114		7
rs13207345	6:28265572	T/C	PGBD1	intron	1.010	0.80848	0.0199	1.47E-26		7
rs13211507	6:28257377	T/C	PGBD1	intron	1.010	1.23183	0.0198	6.281E-26		6
rs144130050	6:28264188	T/C	PGBD1	intron	0.711	1.03272	0.0486	0.5079		-
rs146249461	6:28270517	T/C	PGBD1	near-gene-3	0.994	1.03262	0.0402	0.4245		-
rs16893917	6:28269407	A/G	PGBD1	missense	1.000	1.01776	0.0227	0.4371		7
rs16893929	6:28270817	T/C	PGBD1	near-gene-3	1.000	1.01796	0.0227	0.432		7
rs16901846	6:28254988	T/C	PGBD1	intron	1.010	1.03438	0.0192	0.07907		5
rs182852812	6:28260415	A/G	PGBD1	intron	0.998	1.08459	0.0490	0.0975		-
rs184050810	6:28251261	A/G	PGBD1	intron,near-gene-5	0.999	0.92238	0.0490	0.09899		-
rs190304544	6:28250280	A/G	PGBD1	intron,near-gene-5	0.669	1.04530	0.0627	0.4792		-
rs1936365	6:28268452	C/G	PGBD1	intron	1.000	0.88444	0.0155	2.417E-15		6
rs2142730	6:28266149	T/C	PGBD1	intron	1.000	1.07315	0.0109	1.003E-10		6
rs2281043	6:28268497	T/C	PGBD1	intron	1.010	0.97171	0.0163	0.07853		7
rs2743554	6:28265640	A/G	PGBD1	intron	0.999	0.98600	0.0233	0.5448		7
rs2799081	6:28270584	T/C	PGBD1	near-gene-3	1.000	1.09889	0.0122	1.106E-14		7
rs33932084	6:28268824	A/G	PGBD1	missense	1.010	1.24110	0.0199	1.681E-27		5
rs34396849	6:28250955	A/C	PGBD1	intron,near-gene-5	1.010	1.23244	0.0198	5.094E-26		4
rs34481509	6:28261417	A/G	PGBD1	intron	0.921	1.01603	0.0214	0.4569		6
rs34691223	6:28258208	A/C	PGBD1	intron	1.010	0.81115	0.0198	4.252E-26		7
rs34878803	6:28250179	T/C	PGBD1	intron,near-gene-5	1.010	1.23257	0.0198	4.707E-26		7
rs3800324	6:28264681	A/G	PGBD1	missense,untranslated-5	1.000	1.01664	0.0227	0.4683		7
rs3800325	6:28264692	C/G	PGBD1	missense,untranslated-5	1.000	1.02870	0.0164	0.08492		7
rs3800326	6:28264717	T/C	PGBD1	missense	0.995	0.95123	0.0348	0.1514		7
rs3800327	6:28264928	C/G	PGBD1	intron	0.824	0.97883	0.0226	0.3441		6
rs41269291	6:28251539	A/G	PGBD1	intron,near-gene-5,untranslated-5	0.997	0.97171	0.0235	0.2234		6
rs41269293	6:28254862	C/G	PGBD1	missense,untranslated-5	0.998	0.92127	0.0490	0.09397		5
rs6456811	6:28270047	C/G	PGBD1	missense	1.010	1.03107	0.0163	0.06048		7
rs6901575	6:28250984	A/G	PGBD1	intron,near-gene-5	0.995	0.87442	0.0158	1.885E-17		4
rs6905368	6:28262655	C/G	PGBD1	intron	1.010	0.96041	0.0172	0.01867		7
rs6905391	6:28262686	A/G	PGBD1	intron	1.000	0.88391	0.0155	1.924E-15		7
rs6923170	6:28265547	A/G	PGBD1	intron	1.010	0.97015	0.0163	0.06335		6
rs72854506	6:28252497	T/C	PGBD1	intron	0.997	0.97151	0.0235	0.2197		7
rs72854512	6:28264040	A/G	PGBD1	intron	0.663	1.04050	0.0477	0.4049		7
rs72854513	6:28265954	A/T	PGBD1	intron	1.010	1.23689	0.0199	1.463E-26		6
rs74478410	6:28257013	T/G	PGBD1	intron	0.673	1.03676	0.0322	0.2623		7
rs74830143	6:28267108	T/C	PGBD1	intron	0.981	0.95466	0.0326	0.1547		6
rs75621300	6:28265218	A/G	PGBD1	intron	1.010	1.03583	0.0193	0.06791		7
rs75911870	6:28264053	A/G	PGBD1	intron	0.992	1.03562	0.0380	0.357		6
rs76143968	6:28250202	A/G	PGBD1	intron,near-gene-5	0.984	0.96744	0.0402	0.4097		6
rs77986494	6:28261497	A/G	PGBD1	intron	1.000	0.98275	0.0227	0.4442		7
rs78007034	6:28255949	C/G	PGBD1	intron	0.993	0.99491	0.0278	0.8538		5
rs79093134	6:28260632	T/C	PGBD1	intron	0.993	0.97765	0.0243	0.3527		5
rs9461448	6:28263721	T/G	PGBD1	intron	1.000	0.98373	0.0250	0.5115		7
rs9461449	6:28270064	A/T	PGBD1	untranslated-3	1.000	1.01471	0.0250	0.56		7
rs9468325	6:28250985	T/C	PGBD1	intron,near-gene-5	0.981	0.99790	0.0262	0.9371		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
21489405	GWAS	834 cases; 672 controls
Reference	Study type	Sample size

eQTL Information