PHF3

Basic Information

Gene Symbol	PHF3
Entrez Id	23469
Position	chr6:64356431..64424405
Description	PHD finger protein 3
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10485358	6:64386060	T/C	PHF3	intron	1.000	0.95993	0.0106	0.0001096		7
rs10755432	6:64397853	A/C	PHF3	intron	1.000	1.04112	0.0106	0.0001413		5
rs10943958	6:64414912	A/G	PHF3	intron	0.994	0.98059	0.0111	0.07819		7
rs111995328	6:64362959	T/G	PHF3	intron	0.825	1.06791	0.0536	0.2206		3a
rs112764451	6:64378319	T/C	PHF3	intron	0.707	1.10252	0.0543	0.07221		7
rs113411536	6:64398469	C/G	PHF3	intron	1.000	1.06962	0.0188	0.0003524		7
rs113822315	6:64354345	A/G	PHF3	intron	0.654	0.98432	0.0400	0.6936		7
rs113921536	6:64409520	T/C	PHF3	intron	1.000	0.93482	0.0187	0.0003222		5
rs113997643	6:64387026	A/C	PHF3	intron	0.923	1.05022	0.0474	0.3015		6
rs114211075	6:64414993	T/C	PHF3	intron	0.885	1.02819	0.0510	0.5853		7
rs114251817	6:64354899	A/G	PHF3	intron,near-gene-5	0.641	0.89360	0.0631	0.07465		5
rs114367161	6:64380896	A/G	PHF3	intron	0.680	1.00985	0.0400	0.8065		7
rs114878222	6:64357507	A/T	PHF3	intron	0.770	0.90041	0.0461	0.02288		7
rs115043325	6:64388341	A/G	PHF3	intron,near-gene-5	0.657	0.84122	0.0487	0.0003875		6
rs116400422	6:64392228	A/G	PHF3	intron	0.965	1.00592	0.0361	0.8707		6
rs116558385	6:64357113	A/C	PHF3	intron	0.902	1.04676	0.0361	0.2055		7
rs1197983	6:64364714	T/C	PHF3	intron	0.997	0.94101	0.0172	0.0004104		6
rs12198142	6:64412189	T/C	PHF3	intron	0.998	0.95877	0.0106	0.00006992		7
rs13195981	6:64350595	T/C	PHF3	intron	0.895	0.90874	0.0515	0.06324		7
rs13208965	6:64412185	A/G	PHF3	intron	0.990	0.98010	0.0114	0.07705		7
rs138087715	6:64355310	A/T	PHF3	intron,near-gene-5	0.773	0.96638	0.0614	0.5769		-
rs139160572	6:64417539	T/C	PHF3	intron	0.962	0.96676	0.0425	0.427		-
rs139515977	6:64393557	A/G	PHF3	intron	0.881	1.00572	0.0323	0.861		-
rs139579722	6:64356967	A/G	PHF3	intron	0.851	0.96474	0.0519	0.4892		-
rs1412865	6:64377539	T/C	PHF3	intron	0.985	0.98187	0.0113	0.1066		7
rs141305963	6:64405150	A/G	PHF3	intron	0.674	1.03811	0.0506	0.4596		-
rs145563013	6:64370245	A/T	PHF3	intron	0.960	0.99154	0.0363	0.8142		-
rs146267772	6:64351654	T/C	PHF3	intron	0.895	0.95609	0.0368	0.2222		-
rs146400726	6:64411043	C/G	PHF3	intron	0.965	1.00833	0.0360	0.817		-
rs148011732	6:64371245	A/T	PHF3	intron	0.885	0.98344	0.0523	0.7502		-
rs148847616	6:64414076	C/G	PHF3	intron	0.794	0.90168	0.0440	0.01855		-
rs149093844	6:64409670	A/G	PHF3	intron	0.626	0.88923	0.0555	0.03433		-
rs150705374	6:64372311	T/C	PHF3	intron	0.887	0.95935	0.0557	0.4562		-
rs150897508	6:64398566	T/C	PHF3	intron	0.907	0.93998	0.0603	0.3041		-
rs1681939	6:64353020	A/G	PHF3	intron	0.983	0.96069	0.0166	0.01594		6
rs181178710	6:64398372	A/G	PHF3	intron	0.913	0.97161	0.0585	0.6221		-
rs181684603	6:64361079	T/C	PHF3	intron	0.886	1.01227	0.0587	0.8352		-
rs183619988	6:64354624	A/T	PHF3	intron,near-gene-5	0.882	0.98236	0.0568	0.7539		-
rs187245323	6:64356796	T/C	PHF3	intron	0.825	0.83110	0.0580	0.001431		-
rs188437752	6:64414702	T/C	PHF3	intron	0.912	1.01167	0.0596	0.8458		-
rs188490612	6:64354958	A/G	PHF3	intron,near-gene-5	0.895	1.01542	0.0592	0.7963		-
rs192043704	6:64346356	A/C	PHF3	intron,near-gene-5	0.672	0.98432	0.0473	0.738		-
rs2179988	6:64414527	T/C	PHF3	intron	0.714	0.90195	0.0581	0.07574		7
rs2225595	6:64355587	A/G	PHF3	intron,near-gene-5	0.908	1.04310	0.0122	0.00056		6
rs2295184	6:64416991	T/G	PHF3	intron	0.992	1.07208	0.0190	0.0002384		6
rs34288820	6:64395196	A/G	PHF3	intron,missense	0.771	1.06120	0.0354	0.09366		7
rs3778647	6:64379394	A/G	PHF3	intron	0.997	1.05517	0.0168	0.001364		7
rs3778648	6:64379231	A/G	PHF3	intron	1.000	0.93426	0.0187	0.000285		6
rs3800489	6:64411814	A/G	PHF3	intron	0.991	1.02000	0.0113	0.08093		7
rs3800490	6:64372659	T/C	PHF3	intron	0.988	0.98128	0.0113	0.0964		6
rs3800491	6:64360028	T/G	PHF3	intron	1.000	1.06972	0.0187	0.0003214		4
rs3800492	6:64359713	T/C	PHF3	intron	1.000	1.06823	0.0187	0.0004223		3a
rs3800493	6:64358596	C/G	PHF3	intron	1.000	0.93417	0.0188	0.000283		6
rs3823446	6:64357772	T/G	PHF3	intron	1.000	1.07047	0.0188	0.0002829		6
rs41271581	6:64394066	A/G	PHF3	intron,missense	0.700	0.93426	0.0512	0.1845		7
rs41271589	6:64424782	A/T	PHF3	near-gene-3,untranslated-3	0.998	1.06109	0.0172	0.0005614		6
rs4142625	6:64346402	C/G	PHF3	intron,near-gene-5,untranslated-5	0.913	1.05792	0.0168	0.0008198		4
rs4142626	6:64346366	T/C	PHF3	intron,near-gene-5	0.802	1.00210	0.0540	0.9689		4
rs4351235	6:64351359	C/G	PHF3	intron	0.977	0.98010	0.0114	0.07983		5
rs4710256	6:64368449	T/C	PHF3	intron	0.988	0.98020	0.0113	0.07775		7
rs4710436	6:64370746	T/C	PHF3	intron	0.988	1.01928	0.0113	0.09245		5
rs57888259	6:64414356	T/C	PHF3	intron	0.998	1.06801	0.0188	0.0004734		6
rs58429651	6:64380888	A/G	PHF3	intron	0.990	1.01969	0.0113	0.08523		6
rs58531869	6:64409674	A/T	PHF3	intron	0.992	0.93370	0.0188	0.0002563		5
rs59745934	6:64379079	A/G	PHF3	intron	0.974	1.02768	0.0408	0.5028		6
rs61268055	6:64409628	A/G	PHF3	intron	0.994	1.06812	0.0187	0.0004288		5
rs61369019	6:64351141	A/G	PHF3	intron	0.994	0.93361	0.0187	0.0002398		5
rs61606312	6:64424525	A/G	PHF3	near-gene-3,untranslated-3	1.000	0.93463	0.0187	0.0003079		7
rs62412942	6:64345831	T/C	PHF3	near-gene-5,untranslated-5	0.883	1.01847	0.0520	0.7246		2b
rs62412944	6:64359365	A/G	PHF3	intron	0.655	0.94497	0.0561	0.3135		4
rs62412950	6:64392134	A/G	PHF3	intron	0.999	1.04196	0.0106	0.0001049		7
rs66514362	6:64345116	T/C	PHF3	near-gene-5	0.971	1.07058	0.0195	0.0004737		4
rs66520187	6:64386334	T/C	PHF3	intron	1.000	1.07037	0.0187	0.0002845		7
rs66589841	6:64408706	A/G	PHF3	intron	1.000	0.93482	0.0187	0.0003224		7
rs66629043	6:64345316	A/G	PHF3	near-gene-5	0.830	1.02942	0.0456	0.5252		5
rs66973400	6:64412879	A/C	PHF3	intron	1.000	0.93510	0.0187	0.0003405		7
rs67169857	6:64419759	T/C	PHF3	intron	0.995	0.94242	0.0172	0.0005774		7
rs67342772	6:64364335	A/G	PHF3	intron	1.000	0.93407	0.0188	0.0002751		7
rs67632239	6:64414055	T/C	PHF3	intron	1.000	0.93510	0.0187	0.0003409		7
rs67632720	6:64403181	A/C	PHF3	intron	1.000	0.93445	0.0187	0.0002994		7
rs67674014	6:64406953	A/G	PHF3	intron	0.998	0.94224	0.0172	0.0005285		6
rs67722441	6:64406488	T/G	PHF3	intron	1.000	0.93548	0.0187	0.0003681		7
rs67890600	6:64420669	T/G	PHF3	intron	1.000	1.06769	0.0187	0.0004594		7
rs68128834	6:64398899	A/G	PHF3	intron	0.999	0.94186	0.0172	0.0004818		5
rs6911092	6:64382624	A/T	PHF3	intron	1.000	1.07133	0.0187	0.0002351		5
rs6921180	6:64381461	T/C	PHF3	intron	1.000	0.95964	0.0106	0.00009757		7
rs6922047	6:64371149	T/C	PHF3	intron	0.976	0.97521	0.0405	0.5358		7
rs6932538	6:64382980	T/C	PHF3	intron	1.000	0.96002	0.0106	0.0001155		6
rs72884618	6:64348621	T/C	PHF3	intron	0.932	1.07326	0.0221	0.001361		7
rs72884629	6:64355372	A/G	PHF3	intron,near-gene-5	0.900	0.98827	0.0518	0.8194		7
rs72884634	6:64358940	A/T	PHF3	intron	1.000	0.93417	0.0188	0.0002825		6
rs72884640	6:64361872	T/C	PHF3	intron	1.000	0.93417	0.0188	0.0002813		7
rs72884652	6:64368527	T/C	PHF3	intron	0.899	0.98787	0.0518	0.8141		6
rs72884655	6:64377116	A/G	PHF3	intron	0.873	0.99930	0.0618	0.9908		7
rs72884662	6:64382607	T/C	PHF3	intron	0.603	0.91686	0.0532	0.1028		5
rs72884665	6:64383692	A/G	PHF3	intron	0.898	1.01177	0.0518	0.8218		6
rs72884692	6:64399359	A/G	PHF3	intron	0.724	0.98305	0.0204	0.4008		4
rs74811844	6:64349986	T/C	PHF3	intron	0.909	0.95705	0.0340	0.1975		5
rs76381345	6:64359856	T/C	PHF3	intron	0.970	1.02716	0.0409	0.5118		4
rs76494523	6:64413688	A/C	PHF3	intron	0.962	0.96676	0.0425	0.427		7
rs76655780	6:64368884	T/C	PHF3	intron	0.975	1.02716	0.0406	0.5097		6
rs76760015	6:64373462	T/C	PHF3	intron	0.961	1.03365	0.0426	0.4372		4
rs76765583	6:64418777	C/G	PHF3	intron	0.977	1.02521	0.0406	0.5387		6
rs76778583	6:64344280	A/C	PHF3	near-gene-5	0.672	1.00361	0.0256	0.8885		5
rs76875514	6:64371623	A/G	PHF3	intron	0.967	1.03946	0.0417	0.3538		6
rs76949028	6:64350526	C/G	PHF3	intron	0.913	0.95724	0.0340	0.1987		6
rs76985427	6:64352010	A/C	PHF3	intron	0.902	0.95504	0.0361	0.2027		7
rs77078126	6:64376556	A/G	PHF3	intron	0.878	0.99531	0.0324	0.8838		7
rs77370069	6:64379876	A/T	PHF3	intron	0.961	1.03407	0.0425	0.4305		6
rs77492353	6:64382849	A/C	PHF3	intron	0.846	0.81481	0.0592	0.0005411		4
rs77645879	6:64399896	A/G	PHF3	intron	0.846	1.22703	0.0592	0.0005469		6
rs77811777	6:64357065	A/G	PHF3	intron	0.958	1.03345	0.0427	0.4408		7
rs78318979	6:64352687	A/G	PHF3	intron	0.911	0.95228	0.0344	0.1554		6
rs78939058	6:64429440	A/G	PHF3	near-gene-3	0.960	1.03469	0.0425	0.4222		7
rs79033282	6:64349992	A/T	PHF3	intron	0.909	1.04477	0.0340	0.1978		5
rs79049765	6:64354623	A/T	PHF3	intron,near-gene-5	0.932	0.97668	0.0381	0.5356		5
rs79216306	6:64396938	T/C	PHF3	intron	0.962	0.96686	0.0425	0.4286		6
rs79300703	6:64349658	T/G	PHF3	intron	0.892	1.10054	0.0516	0.06347		5
rs79394287	6:64407275	T/C	PHF3	intron	0.644	0.97570	0.0572	0.6675		7
rs79836132	6:64378178	A/G	PHF3	intron	0.961	0.96696	0.0426	0.4303		7
rs79846048	6:64402885	T/C	PHF3	intron	0.881	0.93062	0.0461	0.1189		6
rs80296607	6:64344092	T/C	PHF3	near-gene-5	0.694	0.93473	0.0434	0.1198		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information