PLCD4

Basic Information

Gene Symbol	PLCD4
Entrez Id	84812
Position	chr2:219472488..219501909
Description	phospholipase C delta 4
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs111767800	2:219486626	A/C	PLCD4	intron	0.783	0.98936	0.0297	0.7192		7
rs114354238	2:219481348	A/G	PLCD4	intron	0.925	1.00270	0.0269	0.9216		7
rs115001095	2:219491630	T/C	PLCD4	intron	0.609	1.01116	0.0313	0.7221		6
rs12620702	2:219471457	T/C	PLCD4	near-gene-5	0.900	0.99820	0.0111	0.8714		6
rs12989189	2:219497928	A/C	PLCD4	intron	0.954	0.98334	0.0164	0.3052		6
rs13003001	2:219485831	A/T	PLCD4	intron,near-gene-5	0.989	1.00511	0.0278	0.8547		7
rs13011342	2:219487342	T/C	PLCD4	intron,near-gene-3	0.989	0.99491	0.0278	0.8553		7
rs13012955	2:219474865	A/T	PLCD4	intron	0.707	0.98689	0.0498	0.7912		6
rs13026613	2:219485944	T/C	PLCD4	intron,near-gene-5	0.989	1.00511	0.0278	0.8549		7
rs139962795	2:219500560	A/G	PLCD4	coding-synon,intron	0.667	1.22495	0.0802	0.01147		-
rs189039030	2:219485167	A/G	PLCD4	intron,near-gene-5	0.752	1.02850	0.0626	0.6537		-
rs191445340	2:219471135	A/G	PLCD4	near-gene-5	0.792	1.04394	0.0582	0.4599		-
rs2278530	2:219501133	A/G	PLCD4	intron,missense	0.999	0.99461	0.0108	0.6144		6
rs34972248	2:219480146	A/G	PLCD4	intron	0.989	1.00602	0.0278	0.8301		6
rs35255403	2:219497279	C/G	PLCD4	intron	0.992	0.99531	0.0277	0.8665		6
rs36068653	2:219489380	C/G	PLCD4	intron	0.990	0.99561	0.0277	0.8734		7
rs3821044	2:219472332	A/G	PLCD4	near-gene-5	0.989	0.99432	0.0278	0.8379		4
rs471479	2:219489868	A/G	PLCD4	intron	0.905	0.99223	0.0111	0.484		6
rs485765	2:219480804	C/G	PLCD4	intron	0.997	0.99382	0.0107	0.5612		1b
rs489321	2:219486627	A/C	PLCD4	intron	0.984	0.99233	0.0108	0.474		7
rs58227790	2:219474856	A/T	PLCD4	intron	0.958	1.00180	0.0286	0.9503		6
rs59341668	2:219488037	T/C	PLCD4	intron,ncRNA	0.988	1.00461	0.0278	0.8674		5
rs62191565	2:219482017	T/C	PLCD4	intron	0.997	0.99273	0.0107	0.4983		7
rs658378	2:219483881	A/T	PLCD4	intron	0.997	0.99541	0.0107	0.6649		7
rs71415849	2:219479886	T/C	PLCD4	intron	0.989	0.99412	0.0278	0.8307		7
rs71415850	2:219490923	A/G	PLCD4	intron	0.991	1.00501	0.0277	0.8569		7
rs73992536	2:219493343	T/G	PLCD4	intron	0.992	0.99511	0.0277	0.8587		7
rs74786768	2:219493479	C/G	PLCD4	intron	0.636	1.01867	0.0502	0.7123		6
rs7575249	2:219471284	A/G	PLCD4	near-gene-5	0.983	1.00813	0.0110	0.4617		6
rs832799	2:219490111	A/C	PLCD4	intron	0.997	0.99243	0.0107	0.4815		7
rs832800	2:219489856	A/G	PLCD4	intron	0.819	0.99521	0.0117	0.6829		6
rs832801	2:219488698	A/G	PLCD4	intron	0.997	0.99263	0.0107	0.4906		6
rs832805	2:219473737	T/C	PLCD4	intron,near-gene-5	0.952	1.00481	0.0111	0.6674		7
rs832806	2:219473914	A/T	PLCD4	intron,near-gene-5	0.987	1.00401	0.0108	0.7076		6
rs864990	2:219494037	A/G	PLCD4	intron	0.997	0.99481	0.0107	0.6276		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information