PTP4A1

Basic Information

Gene Symbol	PTP4A1
Entrez Id	7803
Position	chr6:64281920..64293489
Description	protein tyrosine phosphatase type IVA, member 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1062193	6:64292153	A/G	PTP4A1	untranslated-3	0.999	1.06035	0.0185	0.0015		5
rs10943869	6:64260279	A/C	PTP4A1	intron	0.982	1.02644	0.0114	0.02177		7
rs112609087	6:64261529	T/C	PTP4A1	intron	0.928	1.04456	0.0533	0.4138		7
rs113219475	6:64270108	T/G	PTP4A1	intron	0.999	1.06131	0.0186	0.001354		7
rs113718750	6:64266489	A/G	PTP4A1	intron	0.662	1.00552	0.0405	0.8921		5
rs113904667	6:64271650	T/G	PTP4A1	intron	0.973	0.94129	0.0554	0.2753		5
rs114380593	6:64292559	A/G	PTP4A1	untranslated-3	0.799	1.08687	0.0349	0.01692		4
rs114536102	6:64271301	A/G	PTP4A1	intron	0.735	1.04373	0.0408	0.2936		5
rs114576954	6:64266457	A/G	PTP4A1	intron	0.959	0.95380	0.0570	0.4068		5
rs115804903	6:64261453	A/T	PTP4A1	intron	0.694	0.98679	0.0394	0.7351		6
rs116179901	6:64284457	T/C	PTP4A1	intron	0.894	0.95887	0.0558	0.4513		2b
rs116248901	6:64277256	A/G	PTP4A1	intron	0.966	1.05001	0.0570	0.3918		7
rs13200519	6:64241844	T/C	PTP4A1	intron	0.984	1.02092	0.0113	0.06714		7
rs13205487	6:64273481	T/G	PTP4A1	intron	0.978	1.02614	0.0114	0.02406		6
rs13214797	6:64262753	T/C	PTP4A1	intron	0.805	1.10098	0.0440	0.02878		7
rs13217662	6:64238520	A/G	PTP4A1	intron	0.988	0.97873	0.0112	0.05443		7
rs140188326	6:64271563	T/C	PTP4A1	intron	0.957	1.01461	0.0483	0.7644		-
rs141441964	6:64273529	T/C	PTP4A1	intron	0.966	1.05064	0.0570	0.386		-
rs141759755	6:64274112	T/C	PTP4A1	intron	0.712	0.95945	0.0455	0.363		-
rs143348840	6:64250457	T/C	PTP4A1	intron	0.766	1.04488	0.0469	0.3497		-
rs145384122	6:64282955	A/G	PTP4A1	intron	0.765	0.97560	0.0488	0.6127		-
rs146285860	6:64255374	A/G	PTP4A1	intron	0.891	0.97317	0.0432	0.5279		-
rs147879369	6:64276288	T/C	PTP4A1	intron	0.789	1.02020	0.0525	0.7038		-
rs148248486	6:64236606	T/C	PTP4A1	near-gene-5	0.719	1.06951	0.0344	0.05085		-
rs1681942	6:64239405	T/C	PTP4A1	intron	0.994	1.03728	0.0107	0.0005951		7
rs1681967	6:64270790	A/G	PTP4A1	intron	1.000	1.06088	0.0185	0.001402		4
rs16879705	6:64265405	T/C	PTP4A1	intron	1.000	1.06226	0.0197	0.002135		4
rs16894454	6:64287871	T/C	PTP4A1	intron	1.000	1.06194	0.0197	0.002259		7
rs16894460	6:64293010	A/G	PTP4A1	untranslated-3	1.000	0.94035	0.0196	0.001699		3a
rs1779781	6:64256634	C/G	PTP4A1	intron	0.793	0.96271	0.0219	0.08356		7
rs180874786	6:64261589	T/C	PTP4A1	intron	0.733	0.98462	0.0371	0.6768		-
rs181843297	6:64261829	T/G	PTP4A1	intron	0.948	1.01086	0.0477	0.8213		-
rs183020370	6:64274194	A/G	PTP4A1	intron	0.761	0.96021	0.0453	0.37		-
rs183878201	6:64252977	A/C	PTP4A1	intron	0.805	1.03035	0.0626	0.6326		-
rs185763930	6:64265816	A/G	PTP4A1	intron	0.955	0.98423	0.0482	0.7419		-
rs186316338	6:64278575	A/C	PTP4A1	intron	0.974	1.07219	0.0210	0.0008999		-
rs189392982	6:64257117	T/G	PTP4A1	intron	0.761	1.02521	0.0396	0.5284		-
rs189504519	6:64261760	T/C	PTP4A1	intron	0.957	0.95275	0.0575	0.3995		-
rs2025178	6:64245776	A/G	PTP4A1	intron	0.990	0.98079	0.0112	0.08357		7
rs2075656	6:64286985	A/G	PTP4A1	intron	0.999	1.06279	0.0196	0.001911		5
rs2622274	6:64240516	T/G	PTP4A1	intron	0.995	0.96348	0.0106	0.0004732		5
rs2622310	6:64264169	T/G	PTP4A1	intron	0.998	1.06173	0.0185	0.001238		7
rs2622312	6:64263640	A/T	PTP4A1	intron	0.984	1.02716	0.0112	0.01638		6
rs2622313	6:64272918	A/T	PTP4A1	intron	1.000	1.06194	0.0185	0.001161		6
rs2758242	6:64243997	C/G	PTP4A1	intron	0.995	1.03863	0.0106	0.0003655		7
rs2758244	6:64249629	A/G	PTP4A1	intron	0.987	0.97873	0.0112	0.05393		7
rs2800038	6:64244593	T/C	PTP4A1	intron	0.995	0.96368	0.0107	0.0005202		7
rs2800040	6:64239042	A/G	PTP4A1	intron	0.811	0.96406	0.0126	0.003661		6
rs28396397	6:64250915	A/G	PTP4A1	intron	0.992	0.94762	0.0186	0.003834		6
rs28635226	6:64251124	A/G	PTP4A1	intron	0.992	1.05538	0.0186	0.003797		7
rs35141718	6:64253622	A/C	PTP4A1	intron	0.726	0.97511	0.0201	0.2101		5
rs3800494	6:64284935	A/G	PTP4A1	intron	1.000	1.06184	0.0197	0.002281		3a
rs3857527	6:64245360	A/G	PTP4A1	intron	0.989	0.94923	0.0186	0.005127		5
rs41271559	6:64292687	T/C	PTP4A1	untranslated-3	0.960	1.06226	0.0522	0.2471		3a
rs4538688	6:64251656	T/G	PTP4A1	intron	0.982	1.04383	0.0107	0.00006189		6
rs57899418	6:64248317	A/G	PTP4A1	intron	0.992	1.05475	0.0186	0.004223		5
rs58779953	6:64248020	T/C	PTP4A1	intron	0.992	0.94819	0.0186	0.00424		2b
rs60036836	6:64256633	A/T	PTP4A1	intron	0.992	1.06141	0.0198	0.002594		7
rs61580957	6:64249021	A/G	PTP4A1	intron	0.992	1.05464	0.0186	0.004239		6
rs66500769	6:64249213	T/C	PTP4A1	intron	0.992	1.05506	0.0186	0.003977		7
rs66984720	6:64275598	T/C	PTP4A1	intron	0.998	1.06258	0.0196	0.002016		2c
rs67125777	6:64268322	A/G	PTP4A1	intron	1.000	0.94148	0.0196	0.002128		3a
rs67549604	6:64270825	A/G	PTP4A1	intron	1.000	0.94139	0.0196	0.0021		4
rs68160393	6:64236738	A/T	PTP4A1	near-gene-5	0.618	1.01056	0.0241	0.6648		6
rs6916092	6:64269847	A/G	PTP4A1	intron	0.985	0.97404	0.0114	0.02058		6
rs6936079	6:64272996	T/C	PTP4A1	intron	1.000	0.94101	0.0196	0.001957		7
rs71534831	6:64250441	C/G	PTP4A1	intron	0.980	0.97609	0.0114	0.03363		7
rs72880876	6:64241021	A/C	PTP4A1	intron	0.994	1.06194	0.0201	0.002794		4
rs72880879	6:64245781	A/G	PTP4A1	intron	0.992	1.05454	0.0186	0.004367		7
rs72880884	6:64248385	A/G	PTP4A1	intron	0.990	0.94724	0.0187	0.003699		5
rs75708587	6:64264278	T/C	PTP4A1	intron	0.673	0.98432	0.0253	0.531		7
rs77297953	6:64247946	C/G	PTP4A1	intron	0.701	0.95993	0.0392	0.2968		4
rs77632793	6:64274877	A/G	PTP4A1	intron	0.672	0.99970	0.0306	0.9927		5
rs79051763	6:64253105	T/C	PTP4A1	intron	0.793	1.01867	0.0353	0.6008		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information