PTPRF

Basic Information

Gene Symbol	PTPRF
Entrez Id	5792
Position	chr1:43996547..44089343
Description	protein tyrosine phosphatase, receptor type, F
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10443226	1:44061759	T/C	PTPRF	intron	1.000	0.97492	0.0112	0.02292		5
rs10789435	1:44026053	T/G	PTPRF	intron	0.996	1.04310	0.0126	0.0008182		5
rs10789436	1:44040966	T/G	PTPRF	intron	1.000	1.04394	0.0127	0.000692		2b
rs10789437	1:44050747	T/G	PTPRF	intron	1.000	1.02542	0.0112	0.0248		5
rs10890253	1:44021456	C/G	PTPRF	intron	0.993	1.04019	0.0126	0.001846		6
rs10890254	1:44021713	T/G	PTPRF	intron	0.990	0.99780	0.0107	0.8348		5
rs10890255	1:44031493	A/G	PTPRF	intron	0.989	1.04227	0.0125	0.0009035		4
rs10890256	1:44038083	T/C	PTPRF	intron	0.999	0.96870	0.0113	0.004728		5
rs10890257	1:44038837	T/C	PTPRF	intron	1.000	0.96928	0.0113	0.005585		5
rs10890258	1:44039304	A/G	PTPRF	intron	0.995	1.02922	0.0112	0.01011		5
rs10890261	1:44052377	T/G	PTPRF	intron	0.998	1.04436	0.0127	0.000607		5
rs10890262	1:44055807	A/G	PTPRF	intron	1.000	0.97502	0.0112	0.02334		4
rs10890263	1:44061032	T/C	PTPRF	intron	0.924	1.03025	0.0125	0.01731		6
rs10890264	1:44062267	T/C	PTPRF	intron	1.000	1.02583	0.0112	0.02254		5
rs10890265	1:44062437	T/C	PTPRF	intron	1.000	1.08883	0.0190	7.896E-6		5
rs10890266	1:44072066	T/C	PTPRF	coding-synon	0.984	0.98177	0.0110	0.09413		5
rs10890267	1:44078604	A/G	PTPRF	intron	0.997	0.91870	0.0192	0.00001013		5
rs11210884	1:44062805	T/C	PTPRF	intron	1.000	0.91842	0.0190	7.871E-6		5
rs11210886	1:44071546	A/G	PTPRF	intron	0.997	1.08307	0.0192	0.0000322		5
rs112410202	1:44067080	A/G	PTPRF	intron	0.939	1.10418	0.0300	0.0009565		5
rs112904272	1:43993896	T/C	PTPRF	intron	0.910	1.02020	0.0207	0.3345		5
rs112941725	1:44033365	T/G	PTPRF	intron	0.700	1.01552	0.0444	0.7297		5
rs113024100	1:44008661	T/G	PTPRF	intron	0.721	0.95762	0.0245	0.07711		5
rs114193361	1:44007881	T/C	PTPRF	intron	0.675	0.96764	0.0506	0.5146		4
rs114645329	1:44007308	T/C	PTPRF	intron	0.899	1.04081	0.0287	0.1634		5
rs115309021	1:44004980	T/C	PTPRF	intron	0.758	0.98679	0.0450	0.7684		5
rs115375519	1:44013474	A/G	PTPRF	intron	0.943	0.93305	0.0402	0.08531		5
rs11576774	1:43991848	A/G	PTPRF	intron	0.985	1.01288	0.0111	0.2496		4
rs116119000	1:44079663	A/G	PTPRF	intron	0.940	1.06940	0.0408	0.09973		3a
rs116633576	1:44073022	A/G	PTPRF	intron	0.994	0.98206	0.0559	0.7454		5
rs12023161	1:44067859	A/G	PTPRF	intron	1.000	0.99700	0.0107	0.7782		5
rs12026752	1:44063025	A/G	PTPRF	intron	1.000	1.08883	0.0190	7.858E-6		5
rs12058744	1:44040844	T/C	PTPRF	intron	0.995	0.97375	0.0112	0.01805		4
rs12059628	1:44067473	T/C	PTPRF	intron	1.000	0.99700	0.0107	0.7795		5
rs12069454	1:44064145	T/C	PTPRF	intron	1.000	0.97472	0.0112	0.0219		5
rs12075670	1:44080958	A/G	PTPRF	intron	0.995	1.08937	0.0192	8.77E-6		5
rs12075949	1:44021358	A/G	PTPRF	intron	0.972	0.96609	0.0114	0.00245		7
rs12076635	1:44026656	C/G	PTPRF	intron	0.995	0.96002	0.0126	0.001202		5
rs12079126	1:44076368	T/C	PTPRF	intron	0.996	0.97326	0.0112	0.01595		7
rs12089622	1:44033768	A/C	PTPRF	intron	0.821	0.97307	0.0123	0.02636		5
rs12125409	1:44058899	T/C	PTPRF	intron	1.000	0.97492	0.0112	0.02302		4
rs12126770	1:43989898	T/C	PTPRF	near-gene-5	0.986	0.98876	0.0111	0.3082		7
rs12733052	1:44064939	C/G	PTPRF	intron	1.000	0.97472	0.0112	0.02225		7
rs12734252	1:44064863	T/C	PTPRF	intron	1.000	0.97472	0.0112	0.02223		7
rs139029120	1:44044934	T/C	PTPRF	intron	0.754	1.01076	0.0581	0.8539		-
rs141902724	1:44022182	C/G	PTPRF	intron	0.896	1.01613	0.0609	0.793		-
rs143832821	1:44052083	T/C	PTPRF	intron	0.875	1.00793	0.0364	0.8281		-
rs145218879	1:44042463	T/C	PTPRF	intron	0.702	0.96948	0.0476	0.5147		-
rs145725434	1:44031861	T/C	PTPRF	intron	0.793	0.95542	0.0260	0.07925		-
rs147140721	1:44033858	T/C	PTPRF	intron	0.629	0.94469	0.0557	0.3072		-
rs149608365	1:44047831	A/G	PTPRF	intron	0.730	0.97834	0.0612	0.7201		-
rs16830922	1:44037124	T/C	PTPRF	intron	0.998	1.09101	0.0187	3.411E-6		5
rs16830935	1:44047900	C/G	PTPRF	intron	1.000	1.08806	0.0190	9.308E-6		2b
rs16830948	1:44049266	T/G	PTPRF	intron	1.000	1.08796	0.0190	9.579E-6		5
rs16830952	1:44049386	A/T	PTPRF	intron	1.000	0.91916	0.0190	9.585E-6		5
rs16831024	1:44084620	T/G	PTPRF	intron	0.998	1.09046	0.0192	6.591E-6		5
rs17370961	1:44001813	A/G	PTPRF	intron	0.920	1.03552	0.0154	0.02357		5
rs17371009	1:44003586	A/G	PTPRF	intron	0.760	0.98255	0.0270	0.5137		5
rs17371903	1:44070691	A/G	PTPRF	intron	0.987	1.03977	0.0110	0.0003986		5
rs17849103	1:44064319	A/G	PTPRF	intron	1.000	0.99700	0.0107	0.7784		5
rs181664717	1:44062352	T/G	PTPRF	intron	0.861	1.04812	0.0603	0.436		-
rs186087758	1:44040003	A/G	PTPRF	intron	0.614	1.06567	0.0864	0.4618		-
rs186599549	1:43996568	C/G	PTPRF	intron,untranslated-5	0.675	1.00441	0.0206	0.83		-
rs189125717	1:43994026	A/T	PTPRF	intron	0.892	0.92413	0.0650	0.2242		-
rs189268664	1:44016985	A/T	PTPRF	intron	0.602	1.01187	0.0506	0.8157		-
rs190165901	1:44000603	T/C	PTPRF	intron	0.883	0.94167	0.0496	0.2264		-
rs192146325	1:44061965	T/G	PTPRF	intron	0.644	1.12120	0.0687	0.09584		-
rs2039530	1:44013821	C/G	PTPRF	intron	0.958	1.07047	0.0193	0.0004102		5
rs2077652	1:44045919	A/G	PTPRF	intron	1.000	0.91888	0.0190	8.899E-6		4
rs2117314	1:44056333	A/G	PTPRF	intron	1.000	1.02634	0.0112	0.01988		2b
rs2117315	1:44056462	T/C	PTPRF	intron	1.000	1.02491	0.0112	0.02789		4
rs2117316	1:44058034	A/G	PTPRF	intron	1.000	0.97502	0.0112	0.02365		4
rs2304353	1:44057257	A/G	PTPRF	intron	1.000	1.02562	0.0112	0.02332		5
rs2367723	1:44059052	A/G	PTPRF	intron	1.000	0.99631	0.0107	0.7265		5
rs2478978	1:44031657	T/C	PTPRF	intron	0.996	1.04237	0.0125	0.000912		2b
rs2494995	1:44022303	A/C	PTPRF	intron	0.992	0.96021	0.0127	0.001335		7
rs2782639	1:44006339	A/G	PTPRF	intron	0.978	0.96416	0.0117	0.001808		5
rs2782640	1:44009033	T/C	PTPRF	intron	0.983	1.02214	0.0110	0.04577		5
rs2782641	1:44013355	A/G	PTPRF	intron	0.984	1.02183	0.0110	0.04861		5
rs2819330	1:44002957	A/G	PTPRF	intron	0.975	1.03717	0.0117	0.001801		5
rs2819332	1:44005280	A/G	PTPRF	intron	0.976	1.03759	0.0124	0.002851		5
rs2819333	1:44014573	A/T	PTPRF	intron	0.986	0.97629	0.0110	0.02865		5
rs2819334	1:44014735	T/C	PTPRF	intron	0.988	1.02521	0.0110	0.02343		5
rs2819335	1:44014825	A/G	PTPRF	intron	0.988	0.97385	0.0110	0.01604		5
rs2819336	1:44015809	T/C	PTPRF	intron	0.986	0.97161	0.0111	0.009744		4
rs2819337	1:44016049	C/G	PTPRF	intron	0.881	0.99084	0.0264	0.7274		4
rs2819339	1:44018604	T/G	PTPRF	intron	0.986	1.04289	0.0126	0.0008524		4
rs2819340	1:44039710	T/C	PTPRF	intron	0.981	1.03634	0.0127	0.004907		5
rs2842171	1:44039850	A/G	PTPRF	intron	0.988	1.03842	0.0110	0.0006137		5
rs3000761	1:44026089	T/C	PTPRF	intron	0.996	1.04091	0.0126	0.001471		5
rs3001722	1:43996420	A/T	PTPRF	intron,near-gene-5	0.773	0.99870	0.0409	0.9755		4
rs3001723	1:44037685	A/G	PTPRF	intron	0.995	1.07304	0.0114	5.826E-10		5
rs34880349	1:43999043	A/G	PTPRF	intron	0.662	1.05929	0.0556	0.3		5
rs35287175	1:44051846	A/G	PTPRF	intron	0.946	0.96435	0.0264	0.1695		5
rs36018845	1:44026615	T/C	PTPRF	intron	0.917	0.96233	0.0155	0.01302		5
rs3791134	1:44049156	A/G	PTPRF	intron	0.999	0.96348	0.0110	0.0006859		5
rs3791135	1:44049167	A/G	PTPRF	intron	1.000	1.02511	0.0112	0.02669		5
rs3791136	1:44049947	T/C	PTPRF	intron	0.999	0.96291	0.0110	0.0005603		5
rs3791137	1:44050004	A/G	PTPRF	intron	1.000	0.95628	0.0126	0.0004061		2b
rs3791138	1:44050027	A/C	PTPRF	intron	0.997	1.04477	0.0126	0.0004965		4
rs3791139	1:44051771	T/C	PTPRF	intron	0.999	1.03790	0.0110	0.0006938		5
rs3791140	1:44051778	A/G	PTPRF	intron	0.999	0.96281	0.0110	0.0005481		5
rs3791142	1:44051968	T/C	PTPRF	intron	1.000	0.97550	0.0112	0.02647		5
rs3791143	1:44065235	T/G	PTPRF	intron	1.000	0.97472	0.0112	0.02225		5
rs3791144	1:44066406	T/C	PTPRF	intron	1.000	1.08883	0.0191	7.942E-6		5
rs3791146	1:44066456	C/G	PTPRF	intron	0.984	1.02409	0.0114	0.0359		5
rs3791147	1:44066667	T/C	PTPRF	intron	1.000	1.00300	0.0107	0.7789		5
rs3791149	1:44078359	A/T	PTPRF	intron	0.995	0.97249	0.0112	0.01307		5
rs3791151	1:44078602	A/C	PTPRF	intron	0.982	0.96041	0.0112	0.0003306		5
rs3828148	1:44048147	A/G	PTPRF	intron	1.000	0.97463	0.0112	0.02166		4
rs3828149	1:44050796	T/G	PTPRF	intron	1.000	1.08752	0.0190	0.00001054		5
rs3828150	1:44050856	T/C	PTPRF	intron	1.000	1.04509	0.0127	0.000497		5
rs3828151	1:44058265	A/C	PTPRF	coding-synon	1.000	1.00391	0.0107	0.7144		4
rs45605334	1:44041744	T/C	PTPRF	intron	0.909	0.96822	0.0203	0.1108		5
rs4660736	1:44034901	A/C	PTPRF	intron	0.960	0.95973	0.0112	0.0002334		2b
rs489328	1:44074441	T/C	PTPRF	intron	0.794	1.02439	0.0472	0.6098		7
rs492929	1:44068275	A/G	PTPRF	intron	0.961	0.96831	0.0121	0.007608		5
rs512579	1:44071853	T/C	PTPRF	intron	0.879	1.04164	0.0143	0.004346		5
rs513373	1:44081389	T/C	PTPRF	intron	0.928	1.04123	0.0121	0.0008292		7
rs516790	1:44081712	T/G	PTPRF	intron	0.995	1.04582	0.0122	0.0002306		1f
rs516921	1:44081762	T/G	PTPRF	intron	0.980	1.05033	0.0130	0.0001633		5
rs517622	1:44075227	T/C	PTPRF	intron	0.877	0.99641	0.0293	0.9017		6
rs517849	1:44081873	A/C	PTPRF	intron	0.995	1.04571	0.0122	0.0002377		5
rs519669	1:44075505	C/G	PTPRF	intron	0.996	0.96012	0.0126	0.001268		5
rs58097944	1:44054994	A/G	PTPRF	intron	1.000	0.99193	0.0106	0.4408		5
rs58859557	1:44010456	T/C	PTPRF	intron	0.889	0.97746	0.0217	0.295		5
rs588657	1:44080412	T/C	PTPRF	intron	0.992	1.04666	0.0122	0.0001743		7
rs61769052	1:43998144	A/G	PTPRF	intron	0.868	0.97834	0.0424	0.605		4
rs61769609	1:44024920	A/C	PTPRF	intron	0.763	0.96667	0.0398	0.3939		5
rs61769611	1:44028913	A/G	PTPRF	intron	0.993	0.96880	0.0110	0.00399		5
rs61769613	1:44043553	A/G	PTPRF	intron	0.916	1.03221	0.0146	0.02961		5
rs61769642	1:44051630	A/G	PTPRF	intron	1.000	0.96348	0.0110	0.0006853		5
rs61769643	1:44052198	A/G	PTPRF	intron	0.951	0.96735	0.0122	0.00645		5
rs631248	1:44071221	A/G	PTPRF	coding-synon	0.998	0.95180	0.0125	0.00008239		5
rs639929	1:44083874	A/G	PTPRF	intron	0.996	1.04592	0.0122	0.000218		5
rs641365	1:44083507	T/C	PTPRF	coding-synon	0.996	1.04530	0.0121	0.0002637		1f
rs643445	1:44089632	A/G	PTPRF	near-gene-3	0.998	1.04666	0.0121	0.000174		1f
rs650729	1:44042539	C/G	PTPRF	intron	0.998	1.04289	0.0126	0.0008661		5
rs653953	1:44083015	A/G	PTPRF	intron	0.992	0.93510	0.0112	2.163E-9		2b
rs6665224	1:44063078	T/C	PTPRF	intron	1.000	0.97472	0.0112	0.02206		2b
rs6670906	1:44039913	T/C	PTPRF	intron	0.992	0.97161	0.0112	0.01025		7
rs667676	1:44082216	A/G	PTPRF	intron	0.995	0.95619	0.0122	0.0002314		5
rs6678785	1:44040427	A/T	PTPRF	intron	0.998	0.91640	0.0187	3.181E-6		5
rs6691004	1:44010473	T/C	PTPRF	intron	0.899	1.07530	0.0347	0.03633		5
rs6691160	1:44053834	A/G	PTPRF	intron	1.000	0.97570	0.0112	0.0276		2b
rs6695915	1:44010571	A/G	PTPRF	intron	0.905	1.00130	0.0192	0.9463		5
rs6698389	1:44051574	A/G	PTPRF	intron	0.999	1.03863	0.0110	0.0005512		5
rs6704198	1:44063114	A/G	PTPRF	intron	1.000	0.97472	0.0112	0.022		4
rs68191270	1:44026180	A/C	PTPRF	intron	0.996	1.04185	0.0126	0.001163		5
rs71636604	1:43999327	T/G	PTPRF	intron	0.966	0.95437	0.0121	0.0001196		5
rs71636607	1:44075571	T/G	PTPRF	intron	0.941	0.96252	0.0263	0.1473		5
rs72673082	1:44059242	A/G	PTPRF	intron	0.999	0.96310	0.0110	0.0006039		5
rs72673097	1:44087925	A/G	PTPRF	untranslated-3	0.836	0.97045	0.0394	0.4464		5
rs72887228	1:43989855	C/G	PTPRF	near-gene-5	0.948	1.07294	0.0394	0.07359		7
rs74071929	1:43992111	A/T	PTPRF	intron	0.626	1.03210	0.0364	0.3865		5
rs74735466	1:44031535	A/T	PTPRF	intron	0.804	1.01116	0.0456	0.8072		4
rs75785263	1:44025532	T/G	PTPRF	intron	0.825	1.01308	0.0499	0.7947		5
rs77236314	1:44084083	A/G	PTPRF	intron	0.998	0.91704	0.0192	6.71E-6		5
rs78406870	1:44011061	A/G	PTPRF	intron	0.965	1.09626	0.0247	0.0001938		5
rs79265289	1:44036320	A/C	PTPRF	intron	0.972	0.92127	0.0199	0.00003873		5
rs80194172	1:44084063	T/C	PTPRF	intron	0.998	1.09046	0.0192	6.7E-6		5
rs892488	1:44047742	T/C	PTPRF	intron	1.000	0.97560	0.0112	0.02672		5
rs943513	1:44035472	A/G	PTPRF	intron	0.997	0.96493	0.0110	0.001148		5
rs951740	1:44011737	A/G	PTPRF	intron	0.981	1.02183	0.0110	0.04874		3a
rs9783098	1:44087141	A/G	PTPRF	intron	0.999	1.09057	0.0192	6.563E-6		5
rs9887909	1:44017816	A/G	PTPRF	intron	0.983	0.99372	0.0108	0.5619		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information