RAI1

Basic Information

Gene Symbol	RAI1
Entrez Id	10743
Position	chr17:17584787..17714767
Description	retinoic acid induced 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs11078396	17:17647396	T/G	RAI1	intron	0.995	0.95028	0.0220	0.02043		5
rs11078397	17:17659857	C/G	RAI1	intron	0.991	0.95657	0.0224	0.04716		5
rs111313095	17:17632351	A/C	RAI1	intron	0.605	0.98138	0.0355	0.5959		2a
rs111951069	17:17603972	A/G	RAI1	intron	0.855	0.95094	0.0391	0.1987		4
rs112331986	17:17693578	A/C	RAI1	intron	0.693	1.06748	0.0249	0.008756		4
rs113765477	17:17600525	T/C	RAI1	intron	0.725	1.00723	0.0222	0.7442		5
rs115173716	17:17676425	T/G	RAI1	intron	0.967	0.94743	0.0233	0.02067		6
rs11654526	17:17617309	T/C	RAI1	intron	0.994	1.01258	0.0140	0.3734		4
rs11656699	17:17694761	A/G	RAI1	intron	0.892	0.94186	0.0253	0.01772		5
rs116916747	17:17612318	T/C	RAI1	intron	0.776	0.89880	0.0649	0.1002		5
rs117012348	17:17606243	T/C	RAI1	intron	0.790	0.93660	0.0385	0.08893		4
rs117075956	17:17709372	A/G	RAI1	intron	0.885	1.05359	0.0371	0.1593		5
rs117108944	17:17595715	A/G	RAI1	intron	0.977	1.05169	0.0228	0.02715		5
rs117324089	17:17679426	T/C	RAI1	intron	0.908	1.08253	0.0318	0.01267		4
rs117550277	17:17586123	T/C	RAI1	intron	0.896	1.03521	0.0348	0.3192		4
rs117658613	17:17678352	T/C	RAI1	intron	0.749	1.04844	0.0612	0.4395		5
rs117908897	17:17585146	T/C	RAI1	intron	0.945	1.03025	0.0110	0.006801		4
rs12449524	17:17596461	A/C	RAI1	intron	0.955	0.99611	0.0124	0.7541		4
rs12450196	17:17650750	A/G	RAI1	intron	0.895	0.98314	0.0322	0.5979		2b
rs12451589	17:17687897	A/G	RAI1	intron	0.985	0.97863	0.0223	0.3324		5
rs12453837	17:17708846	C/G	RAI1	intron	0.972	0.94544	0.0112	5.601E-7		5
rs12603857	17:17613073	C/G	RAI1	intron	1.000	1.01147	0.0124	0.3601		4
rs12938840	17:17642003	A/G	RAI1	intron	0.949	0.98079	0.0109	0.07569		5
rs12938914	17:17642088	A/G	RAI1	intron	0.949	0.97990	0.0109	0.06314		5
rs12940014	17:17603317	T/C	RAI1	intron	1.000	1.02870	0.0107	0.007901		5
rs12940418	17:17686052	T/C	RAI1	intron	0.955	0.96686	0.0112	0.002609		5
rs12940675	17:17651214	T/C	RAI1	intron	0.996	0.96580	0.0110	0.001484		7
rs12942059	17:17644364	A/G	RAI1	intron	0.958	0.97716	0.0111	0.03734		4
rs12945601	17:17653411	T/C	RAI1	intron	0.996	1.03500	0.0109	0.00166		2b
rs12946913	17:17706332	A/C	RAI1	intron	0.970	0.94620	0.0112	8.784E-7		7
rs12950737	17:17678573	A/G	RAI1	intron	0.987	0.96676	0.0111	0.002208		6
rs12952495	17:17687776	T/C	RAI1	intron	0.973	0.96628	0.0111	0.002054		5
rs138738187	17:17660465	A/G	RAI1	intron	0.889	1.05527	0.0329	0.1021		-
rs138881146	17:17629959	T/C	RAI1	intron	0.893	0.91778	0.0384	0.02548		-
rs139242538	17:17589997	T/G	RAI1	intron	0.958	0.93407	0.0430	0.1126		-
rs139649469	17:17638828	A/C	RAI1	intron	0.877	1.06332	0.0404	0.1289		-
rs139805201	17:17653042	T/C	RAI1	intron	0.785	0.95094	0.0608	0.4077		-
rs140786034	17:17599106	C/G	RAI1	intron	0.827	1.02378	0.0385	0.5416		-
rs141074012	17:17678158	A/G	RAI1	intron	0.749	0.95390	0.0612	0.4402		-
rs141330797	17:17660684	T/C	RAI1	intron	0.799	1.04844	0.0270	0.07979		-
rs141801467	17:17608800	T/C	RAI1	intron	0.904	1.00150	0.0582	0.979		-
rs142074406	17:17686703	A/G	RAI1	intron	0.875	1.11004	0.0527	0.04761		-
rs143034540	17:17596537	A/C	RAI1	intron	0.806	0.89315	0.0524	0.0311		-
rs144205580	17:17676494	A/G	RAI1	intron	0.663	1.01542	0.0638	0.8101		-
rs148312833	17:17610490	A/G	RAI1	intron	0.604	0.96425	0.0704	0.6048		-
rs149145838	17:17659997	T/G	RAI1	intron	0.797	0.89163	0.0647	0.07655		-
rs149181824	17:17603707	T/G	RAI1	intron	0.730	1.08524	0.0417	0.0494		-
rs150009163	17:17638813	A/G	RAI1	intron	0.978	1.02685	0.0229	0.2483		-
rs150700430	17:17638829	A/G	RAI1	intron	0.675	0.99193	0.0365	0.8233		-
rs151001354	17:17601537	T/C	RAI1	intron	0.828	1.02398	0.0385	0.5391		-
rs181415334	17:17675102	T/C	RAI1	intron	0.758	0.96522	0.0444	0.4264		-
rs191456160	17:17646955	A/G	RAI1	intron	0.729	0.95132	0.0605	0.4095		-
rs2350633	17:17587395	A/G	RAI1	intron	0.977	1.03293	0.0109	0.002956		5
rs2350961	17:17613070	T/C	RAI1	intron	1.000	0.98876	0.0124	0.3618		2b
rs2350962	17:17614097	A/G	RAI1	intron	1.000	0.98629	0.0107	0.1962		4
rs2350976	17:17708529	A/G	RAI1	intron	0.974	1.05993	0.0113	2.271E-7		5
rs28669696	17:17592293	T/G	RAI1	intron	0.960	1.07573	0.0380	0.05441		7
rs34349382	17:17632971	T/C	RAI1	intron	0.724	0.99054	0.0222	0.6685		5
rs34531934	17:17683379	C/G	RAI1	intron,near-gene-5	0.900	0.99890	0.0153	0.9428		7
rs34717629	17:17610404	A/G	RAI1	intron	0.805	0.99154	0.0148	0.564		6
rs35686634	17:17700792	T/C	RAI1	coding-synon	0.942	0.95542	0.0234	0.05159		5
rs3803763	17:17696531	C/G	RAI1	missense	0.967	1.05464	0.0118	6.347E-6		5
rs3818717	17:17707105	T/C	RAI1	coding-synon	0.973	1.04676	0.0110	0.00003346		5
rs4074643	17:17619859	T/C	RAI1	intron	0.989	1.00965	0.0110	0.384		5
rs4244601	17:17625318	A/G	RAI1	intron	0.960	1.03179	0.0151	0.03851		5
rs4496218	17:17587521	T/G	RAI1	intron	0.982	1.02655	0.0108	0.01547		5
rs4636969	17:17619467	A/G	RAI1	intron	1.000	1.01379	0.0107	0.1997		7
rs4924813	17:17616619	A/G	RAI1	intron	0.958	1.03138	0.0151	0.04094		5
rs4925102	17:17596751	C/G	RAI1	intron	0.997	0.97229	0.0107	0.008561		2b
rs4925103	17:17625107	T/C	RAI1	intron	1.010	1.01076	0.0110	0.3291		5
rs4925104	17:17625185	T/G	RAI1	intron	1.000	0.97375	0.0107	0.01281		5
rs4925105	17:17629285	T/C	RAI1	intron	0.998	1.02850	0.0107	0.008512		5
rs4925108	17:17649423	T/C	RAI1	intron	0.995	0.96744	0.0110	0.002554		5
rs4925109	17:17661802	A/G	RAI1	intron	0.999	1.05243	0.0114	7.737E-6		5
rs4925110	17:17661821	A/G	RAI1	intron	0.901	1.04425	0.0437	0.3223		5
rs4925112	17:17700573	T/C	RAI1	coding-synon	0.949	1.04227	0.0234	0.07702		5
rs4925114	17:17711270	A/G	RAI1	intron	0.974	1.06152	0.0113	1.193E-7		4
rs4995264	17:17610587	T/C	RAI1	intron	1.000	1.01400	0.0107	0.1928		6
rs58713387	17:17603223	A/G	RAI1	intron	0.939	1.05232	0.0406	0.2086		5
rs58788694	17:17591285	A/G	RAI1	intron	0.862	0.96185	0.0317	0.2189		6
rs59236718	17:17611725	T/C	RAI1	intron	0.945	1.01157	0.0167	0.4903		5
rs60742094	17:17615623	A/G	RAI1	intron	0.955	1.06481	0.0287	0.02841		5
rs60889477	17:17675545	A/G	RAI1	intron	0.984	1.04582	0.0224	0.04565		5
rs62064076	17:17586185	T/C	RAI1	intron	0.826	1.09988	0.0396	0.01629		3a
rs62064078	17:17610079	T/C	RAI1	intron	0.961	1.05929	0.0227	0.01118		5
rs62064079	17:17610752	A/G	RAI1	intron	0.993	1.01106	0.0140	0.4335		6
rs62064082	17:17625022	A/G	RAI1	intron	1.000	0.96618	0.0145	0.01813		5
rs62064083	17:17626112	A/C	RAI1	intron	0.987	1.04362	0.0182	0.01916		3a
rs62064084	17:17628755	A/G	RAI1	intron	0.996	1.03552	0.0146	0.01661		5
rs62064085	17:17629523	A/G	RAI1	intron	0.989	1.04446	0.0182	0.01654		5
rs62064086	17:17631794	A/G	RAI1	intron	0.992	0.96483	0.0146	0.01439		5
rs62064087	17:17632013	T/G	RAI1	intron	0.979	1.04498	0.0183	0.01608		5
rs62064088	17:17632015	T/C	RAI1	intron	0.978	1.04425	0.0183	0.01777		5
rs62064089	17:17636817	T/C	RAI1	intron	0.831	1.10860	0.0404	0.01074		4
rs62064091	17:17641757	A/G	RAI1	intron	0.830	1.10583	0.0404	0.01272		4
rs62064093	17:17658090	A/G	RAI1	intron	0.800	1.05159	0.0262	0.05474		7
rs6502615	17:17612023	T/C	RAI1	intron	1.000	0.98187	0.0108	0.09012		7
rs71367412	17:17621007	T/C	RAI1	intron	0.806	0.99124	0.0148	0.5522		5
rs71367413	17:17626420	C/G	RAI1	intron	0.726	1.00844	0.0222	0.7039		2b
rs71367414	17:17634550	T/C	RAI1	intron	0.790	0.99114	0.0149	0.5509		4
rs720856	17:17645951	C/G	RAI1	intron	0.969	0.96031	0.0123	0.0009649		5
rs7210822	17:17689473	T/C	RAI1	intron	0.833	1.03407	0.0374	0.3701		5
rs7214245	17:17591759	A/T	RAI1	intron	0.963	0.96977	0.0109	0.005015		5
rs7217590	17:17678602	C/G	RAI1	intron	0.979	0.98216	0.0222	0.4182		6
rs72836878	17:17593249	A/G	RAI1	intron	0.826	1.00995	0.0211	0.6387		6
rs72836886	17:17617965	T/C	RAI1	intron	0.858	0.96773	0.0186	0.07846		5
rs73292256	17:17599877	C/G	RAI1	intron	0.967	0.93538	0.0404	0.09875		2b
rs73294177	17:17637937	T/C	RAI1	intron	0.923	1.04488	0.0597	0.4621		5
rs73295691	17:17674708	A/G	RAI1	intron	0.987	1.04687	0.0225	0.04205		5
rs75592986	17:17599729	A/G	RAI1	intron	0.742	0.95066	0.0566	0.3708		5
rs76381434	17:17647770	A/G	RAI1	intron	0.993	1.04760	0.0226	0.03997		6
rs76444726	17:17632105	T/G	RAI1	intron	0.988	0.95018	0.0227	0.02464		5
rs76489162	17:17650092	A/G	RAI1	intron	0.895	1.01613	0.0322	0.6196		7
rs76982527	17:17646128	T/G	RAI1	intron	0.831	1.09834	0.0398	0.01848		5
rs77321515	17:17707887	C/G	RAI1	intron	0.852	0.96580	0.0330	0.2909		5
rs77745346	17:17612187	T/C	RAI1	intron	0.986	1.01837	0.0225	0.4189		5
rs77904527	17:17624349	C/G	RAI1	intron	1.000	1.03490	0.0145	0.01828		5
rs78801951	17:17594944	C/G	RAI1	intron	0.900	0.98020	0.0357	0.5763		5
rs79571890	17:17611197	T/C	RAI1	intron	0.952	1.01877	0.0262	0.4768		7
rs79642939	17:17589272	T/C	RAI1	intron	0.970	1.07552	0.0362	0.04436		4
rs80318113	17:17689629	A/G	RAI1	intron	0.886	0.94497	0.0333	0.08939		4
rs8065154	17:17614947	A/G	RAI1	intron	1.000	0.98020	0.0108	0.06385		4
rs8067439	17:17698254	A/G	RAI1	coding-synon	0.968	0.94734	0.0112	1.402E-6		5
rs8071107	17:17607317	T/C	RAI1	intron	1.010	1.01015	0.0110	0.3588		5
rs8075153	17:17622666	T/C	RAI1	intron	1.000	0.98226	0.0108	0.09671		5
rs8079880	17:17629992	T/C	RAI1	intron	0.977	1.05411	0.0222	0.01742		5
rs8080139	17:17631940	C/G	RAI1	intron	0.991	0.98541	0.0108	0.1709		5
rs8082051	17:17609713	A/T	RAI1	intron	0.993	1.01116	0.0140	0.4266		4
rs9303142	17:17590736	T/C	RAI1	intron	0.965	1.08806	0.0342	0.01371		7
rs9890330	17:17601888	T/C	RAI1	intron	0.946	1.06823	0.0395	0.09507		5
rs9890929	17:17587550	A/G	RAI1	intron	0.966	1.08926	0.0342	0.01238		5
rs9897150	17:17593284	T/C	RAI1	intron	0.968	0.95237	0.0362	0.1776		7
rs9897309	17:17623988	A/G	RAI1	intron	1.000	0.97482	0.0107	0.01691		5
rs9897596	17:17593453	T/C	RAI1	intron	0.985	1.03015	0.0107	0.005648		6
rs9899445	17:17611124	T/C	RAI1	intron	0.992	1.02051	0.0109	0.06186		7
rs9900148	17:17611411	T/G	RAI1	intron	1.000	1.01308	0.0107	0.2231		5
rs9900803	17:17650978	T/C	RAI1	intron	0.995	0.95113	0.0114	0.00001047		6
rs9904351	17:17624193	T/C	RAI1	intron	1.010	1.01035	0.0110	0.3474		5
rs9905513	17:17594539	T/C	RAI1	intron	0.965	0.92552	0.0380	0.04169		5
rs9905702	17:17633932	A/T	RAI1	intron	0.983	1.01654	0.0108	0.1271		7
rs9906532	17:17628241	T/C	RAI1	intron	0.995	0.97356	0.0107	0.01225		5
rs9907986	17:17628141	T/C	RAI1	intron	1.000	1.01066	0.0110	0.3373		2b
rs9909618	17:17607991	A/G	RAI1	intron	0.972	0.99154	0.0141	0.5434		5
rs9910075	17:17655073	T/C	RAI1	intron	0.987	0.94942	0.0221	0.01868		5
rs9910411	17:17609246	T/G	RAI1	intron	0.999	0.98128	0.0108	0.08118		7
rs9914733	17:17622136	C/G	RAI1	intron	1.000	0.98629	0.0124	0.2682		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information