RANGAP1

Basic Information

Gene Symbol	RANGAP1
Entrez Id	5905
Position	chr22:41641615..41682216
Description	Ran GTPase activating protein 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs11703267	22:41646738	A/G	RANGAP1	intron	0.998	1.02521	0.0107	0.01995		5
rs117255386	22:41666185	A/C	RANGAP1	intron	0.964	1.10252	0.0218	7.7E-6		7
rs117535660	22:41665676	C/G	RANGAP1	intron	0.928	1.03118	0.0312	0.326		7
rs118089244	22:41679979	A/G	RANGAP1	intron	0.951	1.10076	0.0217	9.755E-6		6
rs118129028	22:41666645	A/C	RANGAP1	intron	0.818	0.81465	0.0459	7.929E-6		6
rs118180630	22:41661044	T/G	RANGAP1	intron	0.819	1.00874	0.0286	0.762		5
rs139502	22:41648091	T/C	RANGAP1	intron	0.964	0.97385	0.0109	0.01538		7
rs139513	22:41655058	A/G	RANGAP1	intron	0.988	0.96851	0.0129	0.01318		4
rs139764778	22:41665995	A/G	RANGAP1	intron	0.696	0.98639	0.0355	0.699		-
rs140636543	22:41653718	A/G	RANGAP1	intron	0.719	1.05327	0.0607	0.3927		-
rs142314105	22:41667156	T/G	RANGAP1	intron	0.916	0.98423	0.0371	0.6686		-
rs146017020	22:41650848	T/C	RANGAP1	intron,near-gene-5	0.856	0.89628	0.0284	0.0001136		-
rs147001941	22:41664448	A/G	RANGAP1	intron	0.625	1.04718	0.0324	0.1545		-
rs148828155	22:41667629	T/C	RANGAP1	intron	0.699	1.00874	0.0589	0.8827		-
rs181874495	22:41663135	A/G	RANGAP1	intron	0.638	0.91284	0.0320	0.00438		-
rs185854756	22:41662026	A/G	RANGAP1	intron	0.765	0.89655	0.0587	0.06304		-
rs186533270	22:41657075	T/C	RANGAP1	intron	0.779	1.07530	0.0517	0.16		-
rs192537020	22:41659019	C/G	RANGAP1	intron	0.813	0.90783	0.0659	0.1424		-
rs1953	22:41641984	T/C	RANGAP1	untranslated-3	0.984	0.98128	0.0123	0.1236		5
rs1983631	22:41644074	T/C	RANGAP1	intron	0.993	1.05654	0.0114	1.517E-6		5
rs2066780	22:41652250	T/C	RANGAP1	coding-synon	0.717	1.04980	0.0607	0.4233		4
rs2235849	22:41653540	T/G	RANGAP1	intron	1.000	0.95018	0.0111	4.393E-6		5
rs2235850	22:41657626	T/C	RANGAP1	intron	1.000	1.05169	0.0111	6.105E-6		5
rs2235851	22:41660645	A/G	RANGAP1	intron	0.990	0.98344	0.0138	0.2258		5
rs2235852	22:41661154	T/G	RANGAP1	intron	1.000	1.05096	0.0111	8.026E-6		1f
rs2267429	22:41667493	C/G	RANGAP1	intron	0.997	1.05043	0.0111	0.00001031		7
rs2284079	22:41658632	T/C	RANGAP1	intron	1.000	1.05138	0.0111	7.002E-6		5
rs2413639	22:41659580	A/G	RANGAP1	intron	0.986	1.04991	0.0113	0.00001501		6
rs3171692	22:41642212	T/C	RANGAP1	untranslated-3	0.993	1.05633	0.0115	1.777E-6		4
rs34333301	22:41666943	I2/D	RANGAP1	intron	1.000	0.94705	0.0114	1.844E-6		-
rs35336262	22:41679900	D/I3	RANGAP1	intron	0.996	1.05538	0.0114	2.27E-6		-
rs45627435	22:41645257	T/C	RANGAP1	intron	0.956	1.10274	0.0219	7.84E-6		5
rs4820435	22:41652846	T/G	RANGAP1	intron	1.000	1.05570	0.0114	2.071E-6		3a
rs4822017	22:41652332	T/C	RANGAP1	intron	0.761	1.02912	0.0289	0.3208		4
rs6002307	22:41667400	A/C	RANGAP1	intron	0.778	1.01440	0.0133	0.2807		6
rs6519249	22:41671732	A/G	RANGAP1	intron	1.000	0.97453	0.0107	0.01564		6
rs73176656	22:41643732	A/G	RANGAP1	intron	0.878	1.10120	0.0264	0.0002669		5
rs74565399	22:41662400	A/G	RANGAP1	intron	0.732	0.95954	0.0458	0.3668		5
rs75131768	22:41658709	T/C	RANGAP1	intron	0.818	1.00803	0.0287	0.7802		5
rs78158123	22:41679524	T/C	RANGAP1	intron,near-gene-5	0.958	0.90457	0.0218	4.089E-6		6
rs79372544	22:41665261	A/G	RANGAP1	intron	0.696	0.96551	0.0444	0.4291		5
rs8139515	22:41673592	A/T	RANGAP1	intron	0.992	1.01816	0.0138	0.1913		7
rs8139705	22:41680898	T/C	RANGAP1	intron	0.991	0.98324	0.0138	0.2197		5
rs8139784	22:41682014	T/G	RANGAP1	intron,near-gene-5,untranslated-5	0.991	0.98324	0.0138	0.2208		2b
rs9607787	22:41662696	A/G	RANGAP1	intron	0.928	1.03345	0.0294	0.2628		7
rs9611526	22:41642411	T/C	RANGAP1	untranslated-3	0.927	1.02337	0.0306	0.4503		4
rs9611527	22:41644428	A/G	RANGAP1	intron	0.995	1.05696	0.0114	1.248E-6		5
rs9611528	22:41648502	T/C	RANGAP1	intron,near-gene-3	0.999	0.95009	0.0112	4.326E-6		5
rs9611540	22:41674203	T/C	RANGAP1	intron	0.991	1.06131	0.0116	2.654E-7		7
rs9611542	22:41677317	T/C	RANGAP1	intron	1.000	1.05527	0.0114	2.436E-6		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information