RCN3

Basic Information

Gene Symbol	RCN3
Entrez Id	57333
Position	chr19:50030875..50046890
Description	reticulocalbin 3, EF-hand calcium binding domain
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10419198	19:50038017	T/C	RCN3	intron	0.894	0.95734	0.0126	0.0005389		4
rs111410736	19:50045082	T/C	RCN3	intron	0.790	1.04770	0.0252	0.06504		6
rs111562439	19:50043275	T/C	RCN3	intron	0.905	0.94393	0.0214	0.007093		7
rs111640435	19:50045097	T/C	RCN3	intron	0.869	1.06109	0.0224	0.008009		6
rs111648367	19:50044107	T/G	RCN3	intron	0.903	1.05971	0.0215	0.00693		6
rs111652750	19:50043827	T/C	RCN3	intron	0.904	1.05961	0.0215	0.006977		7
rs111817044	19:50037422	T/C	RCN3	intron	0.912	0.94261	0.0214	0.005758		4
rs111833847	19:50033838	T/C	RCN3	intron	0.884	0.95849	0.0283	0.1343		6
rs112060049	19:50041581	A/G	RCN3	intron	0.841	0.94139	0.0220	0.006075		7
rs112135459	19:50044875	A/G	RCN3	intron	0.898	0.94224	0.0217	0.006224		7
rs112173908	19:50047311	A/G	RCN3	near-gene-3	0.878	1.06279	0.0215	0.004543		7
rs112212888	19:50044980	A/T	RCN3	intron	0.901	0.94346	0.0215	0.006722		6
rs112330409	19:50030701	A/C	RCN3	near-gene-5	0.898	1.06748	0.0208	0.001647		7
rs113305073	19:50044264	A/T	RCN3	intron	0.903	0.94365	0.0215	0.006891		7
rs113367289	19:50041571	T/C	RCN3	intron	0.883	0.93435	0.0226	0.002693		7
rs113784288	19:50044339	T/C	RCN3	intron	0.903	1.05971	0.0215	0.006858		7
rs113886122	19:50044741	C/G	RCN3	intron	0.860	1.04258	0.0163	0.01043		7
rs117411536	19:50034766	A/G	RCN3	intron	0.804	1.11527	0.0333	0.001066		7
rs118068073	19:50046915	T/C	RCN3	near-gene-3	0.622	0.89853	0.0615	0.08166		5
rs138734377	19:50039118	A/T	RCN3	intron	0.740	1.03728	0.0158	0.02066		-
rs139852150	19:50033083	A/G	RCN3	intron	0.837	0.97434	0.0249	0.297		-
rs149836518	19:50030468	A/G	RCN3	near-gene-5	0.688	0.96783	0.0597	0.5838		-
rs185322830	19:50032455	T/C	RCN3	intron	0.658	1.07509	0.0505	0.152		-
rs3187346	19:50046365	T/C	RCN3	coding-synon	0.898	1.06003	0.0215	0.006724		5
rs34400029	19:50041176	A/G	RCN3	intron	0.870	1.06332	0.0222	0.005595		7
rs34459162	19:50045916	T/C	RCN3	coding-synon	0.896	1.06418	0.0216	0.003908		5
rs34654230	19:50045878	T/C	RCN3	missense	0.899	0.94327	0.0215	0.006613		5
rs4296355	19:50032160	T/C	RCN3	intron	0.911	0.94393	0.0214	0.00709		5
rs45450996	19:50040543	T/C	RCN3	intron	0.910	0.94252	0.0214	0.005779		7
rs45482295	19:50046239	A/G	RCN3	intron	0.898	1.05950	0.0215	0.007181		5
rs45518331	19:50040506	A/G	RCN3	intron	0.822	1.03438	0.0373	0.3656		7
rs45531336	19:50046165	C/G	RCN3	intron	0.882	1.06503	0.0242	0.009262		5
rs4560020	19:50042535	A/G	RCN3	intron	0.908	1.05993	0.0214	0.006662		7
rs57875150	19:50035829	T/C	RCN3	intron	0.882	0.93538	0.0200	0.0008649		7
rs57989898	19:50041951	A/G	RCN3	intron	0.908	0.94412	0.0214	0.007284		7
rs58075796	19:50041279	A/C	RCN3	intron	0.909	1.05908	0.0214	0.007307		5
rs58269718	19:50042159	T/G	RCN3	intron	0.908	0.94412	0.0214	0.007273		5
rs59740905	19:50039130	T/G	RCN3	intron	0.727	1.05622	0.0259	0.03446		5
rs60004045	19:50042151	T/C	RCN3	intron	0.908	1.05919	0.0214	0.007271		5
rs60163835	19:50041367	A/G	RCN3	intron	0.909	0.94412	0.0214	0.007301		5
rs61102029	19:50040986	T/C	RCN3	intron	0.909	0.94431	0.0214	0.007431		6
rs61212513	19:50045205	A/C	RCN3	intron	0.881	1.06162	0.0222	0.006993		7
rs7256116	19:50038220	A/C	RCN3	intron	0.783	1.04844	0.0201	0.0184		2b
rs73057945	19:50038281	A/C	RCN3	intron	0.820	1.00572	0.0231	0.8065		2b
rs73582450	19:50031146	T/C	RCN3	near-gene-5,untranslated-5	0.878	0.93866	0.0202	0.001718		2b
rs73582451	19:50033707	A/G	RCN3	intron	0.911	0.94318	0.0214	0.006342		6
rs73582454	19:50034039	C/G	RCN3	intron	0.882	1.06801	0.0201	0.001045		5
rs73582456	19:50034101	A/G	RCN3	intron	0.911	0.94318	0.0214	0.006355		5
rs73582460	19:50036306	T/C	RCN3	intron	0.881	0.93613	0.0200	0.0009686		5
rs73582462	19:50036570	C/G	RCN3	intron	0.869	0.93885	0.0202	0.001757		4
rs73582463	19:50037446	C/G	RCN3	intron	0.912	1.05897	0.0214	0.007307		4
rs73582470	19:50040152	T/C	RCN3	intron	0.911	1.05887	0.0214	0.007411		7
rs73582475	19:50042016	C/G	RCN3	intron	0.908	0.94242	0.0215	0.005742		5
rs73582482	19:50043053	C/G	RCN3	intron	0.904	1.05950	0.0216	0.00737		7
rs73582485	19:50044328	T/C	RCN3	intron	0.903	1.05971	0.0215	0.006885		6
rs73586516	19:50046924	A/G	RCN3	near-gene-3	0.889	1.06141	0.0215	0.005666		5
rs73586517	19:50047054	A/G	RCN3	near-gene-3	0.896	1.06067	0.0215	0.00625		7
rs73586518	19:50047224	T/C	RCN3	near-gene-3	0.896	0.94271	0.0215	0.006179		7
rs74255083	19:50034045	A/G	RCN3	intron	0.882	1.06801	0.0201	0.001045		5
rs74504832	19:50041891	T/C	RCN3	intron	0.657	0.97463	0.0346	0.4576		7
rs77229696	19:50040696	A/G	RCN3	intron	0.910	0.94422	0.0214	0.007353		7
rs77480051	19:50046941	T/C	RCN3	near-gene-3	0.882	0.94280	0.0215	0.006076		6
rs78025330	19:50030541	T/C	RCN3	near-gene-5	0.855	0.93800	0.0214	0.002753		6
rs78970126	19:50036597	T/C	RCN3	intron	0.910	0.94195	0.0214	0.005125		2b
rs79476680	19:50036634	T/G	RCN3	intron	0.852	0.94422	0.0204	0.005018		4
rs8100016	19:50044731	T/C	RCN3	intron	0.902	1.06003	0.0215	0.006619		6
rs8100037	19:50044776	T/C	RCN3	intron	0.902	1.05993	0.0215	0.006791		7
rs8102198	19:50044851	C/G	RCN3	intron	0.901	0.94346	0.0215	0.0068		6
rs8105626	19:50042371	T/C	RCN3	intron	0.908	1.05971	0.0214	0.006825		7
rs8108243	19:50042829	T/C	RCN3	intron	0.908	0.94280	0.0214	0.005974		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information