RFTN2

Basic Information

Gene Symbol	RFTN2
Entrez Id	130132
Position	chr2:198435527..198540584
Description	raftlin family member 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10166328	2:198511917	A/G	RFTN2	intron	1.000	1.06205	0.0112	7.049E-8		6
rs10172961	2:198446859	T/C	RFTN2	intron	0.993	1.07058	0.0112	1.012E-9		7
rs10178946	2:198463090	T/G	RFTN2	intron	0.994	0.93407	0.0112	9.745E-10		7
rs10196961	2:198513930	A/G	RFTN2	intron	1.000	0.95237	0.0106	4.093E-6		5
rs10198804	2:198461941	A/C	RFTN2	intron	1.000	1.00914	0.0135	0.4985		6
rs10203581	2:198515900	A/G	RFTN2	intron	1.000	0.94101	0.0112	5.441E-8		6
rs10497806	2:198508951	A/G	RFTN2	coding-synon	1.000	0.94120	0.0112	5.78E-8		5
rs10931787	2:198520615	A/G	RFTN2	intron	1.000	1.06247	0.0112	5.808E-8		6
rs10931788	2:198531084	A/G	RFTN2	intron	1.000	1.06258	0.0112	5.614E-8		5
rs111232582	2:198448338	A/G	RFTN2	intron	0.995	0.94573	0.0106	1.401E-7		7
rs111736188	2:198452091	T/C	RFTN2	intron	0.662	1.00985	0.0484	0.8402		7
rs113964240	2:198456310	A/C	RFTN2	intron	0.984	0.94791	0.0107	5.223E-7		4
rs113990162	2:198456064	T/C	RFTN2	intron	1.000	1.01136	0.0135	0.404		5
rs114560888	2:198451258	T/C	RFTN2	intron	0.629	1.07058	0.0630	0.2786		7
rs114650254	2:198531384	T/C	RFTN2	intron	0.615	1.13780	0.0443	0.003554		5
rs114751842	2:198444871	T/C	RFTN2	intron	0.650	0.91805	0.0307	0.005335		6
rs114883263	2:198437838	A/G	RFTN2	intron	0.953	0.89012	0.0544	0.03236		6
rs115174917	2:198466505	A/C	RFTN2	intron	0.708	1.02081	0.0455	0.6511		6
rs115729683	2:198463691	T/G	RFTN2	intron	0.748	1.02357	0.0280	0.4055		6
rs115899896	2:198482396	A/C	RFTN2	intron	0.627	0.94649	0.0563	0.3291		7
rs116121900	2:198515254	A/G	RFTN2	intron	0.658	1.08361	0.0284	0.004647		7
rs116611249	2:198456340	T/C	RFTN2	intron	0.694	1.04959	0.0249	0.05191		5
rs116694274	2:198486234	A/G	RFTN2	intron	0.760	1.07885	0.0295	0.01014		6
rs11899920	2:198444623	C/G	RFTN2	intron	0.990	1.05517	0.0106	4.365E-7		7
rs11900232	2:198466273	T/C	RFTN2	intron	0.994	1.07058	0.0112	9.955E-10		7
rs13000656	2:198522126	T/C	RFTN2	intron	0.996	0.94007	0.0112	3.431E-8		6
rs13394214	2:198527371	T/C	RFTN2	intron	1.000	0.94092	0.0112	5.222E-8		6
rs13396312	2:198493703	A/T	RFTN2	intron	0.995	0.95361	0.0106	7.851E-6		6
rs13404366	2:198522632	A/G	RFTN2	intron	0.987	1.05897	0.0111	2.67E-7		4
rs13411968	2:198467141	T/C	RFTN2	intron	0.994	0.93417	0.0112	1.075E-9		7
rs13413470	2:198512849	A/G	RFTN2	intron	1.000	0.95266	0.0106	4.7E-6		4
rs13414170	2:198450030	A/T	RFTN2	intron	0.995	1.07111	0.0112	7.803E-10		5
rs13427590	2:198516821	T/C	RFTN2	intron	0.998	0.95190	0.0106	3.333E-6		7
rs13429970	2:198522635	C/G	RFTN2	intron	0.999	1.04991	0.0106	4.465E-6		4
rs139045873	2:198487903	T/C	RFTN2	intron	0.613	1.01227	0.0624	0.8447		-
rs139467751	2:198537773	T/C	RFTN2	intron	0.726	0.96618	0.0497	0.4886		-
rs140302188	2:198439758	T/C	RFTN2	intron	0.723	0.94082	0.0499	0.2214		-
rs140518394	2:198442490	T/C	RFTN2	intron	0.632	0.95638	0.0363	0.2198		-
rs141082499	2:198469502	A/T	RFTN2	intron	0.653	1.08459	0.0283	0.00416		-
rs141767061	2:198472078	T/G	RFTN2	intron	0.988	1.00965	0.0136	0.4791		-
rs141905926	2:198440881	T/C	RFTN2	intron	0.647	1.02194	0.0436	0.6192		-
rs143534237	2:198505208	A/T	RFTN2	intron	0.963	1.00521	0.0137	0.705		-
rs143851124	2:198476152	A/G	RFTN2	intron	0.797	1.05222	0.0143	0.0003838		-
rs144930737	2:198505468	T/C	RFTN2	intron	0.946	0.96185	0.0114	0.000622		-
rs147083731	2:198475038	T/C	RFTN2	intron	0.774	0.95600	0.0501	0.369		-
rs150030078	2:198441018	A/G	RFTN2	intron	0.719	0.91229	0.0427	0.0316		-
rs1598469	2:198515658	T/C	RFTN2	intron	1.000	1.06279	0.0112	5.046E-8		6
rs16866940	2:198509058	T/C	RFTN2	intron	1.010	0.99104	0.0132	0.4948		6
rs16866970	2:198511086	A/G	RFTN2	intron	0.999	0.95218	0.0106	3.904E-6		7
rs16866980	2:198513009	A/C	RFTN2	intron	1.010	1.00914	0.0132	0.4929		5
rs16867018	2:198521490	T/C	RFTN2	intron	1.010	0.99114	0.0132	0.5018		7
rs17731449	2:198465840	T/C	RFTN2	intron	0.995	1.05686	0.0106	1.829E-7		6
rs181542385	2:198493834	A/T	RFTN2	intron	0.656	0.90737	0.0545	0.07443		-
rs182680009	2:198478960	T/C	RFTN2	intron	0.694	0.85214	0.0709	0.02409		-
rs188945181	2:198530527	A/G	RFTN2	intron	0.699	0.85761	0.0703	0.02899		-
rs1961558	2:198487278	T/C	RFTN2	intron	0.988	0.93529	0.0112	2.453E-9		7
rs1979239	2:198498316	T/G	RFTN2	intron	1.000	1.06226	0.0112	6.541E-8		6
rs2045242	2:198507649	A/G	RFTN2	intron	0.999	0.94129	0.0112	6.263E-8		7
rs2045244	2:198506466	T/C	RFTN2	intron	0.999	0.99243	0.0133	0.5687		5
rs2045245	2:198485341	A/C	RFTN2	intron	0.988	1.07004	0.0112	1.654E-9		6
rs2124317	2:198477606	A/G	RFTN2	intron	0.995	0.93435	0.0112	1.195E-9		7
rs2340687	2:198460040	T/G	RFTN2	intron	1.000	1.01116	0.0135	0.4117		7
rs2340688	2:198438425	T/C	RFTN2	intron	0.993	1.05717	0.0106	1.645E-7		1f
rs34139878	2:198489253	T/C	RFTN2	intron	0.969	0.93566	0.0113	3.745E-9		6
rs3828317	2:198495431	C/G	RFTN2	intron	0.999	0.95256	0.0106	4.671E-6		7
rs4286272	2:198535678	T/C	RFTN2	intron	0.980	0.95352	0.0107	8.72E-6		5
rs4389332	2:198477620	A/C	RFTN2	intron	0.996	0.94772	0.0106	4.158E-7		6
rs4435447	2:198488468	C/G	RFTN2	intron	0.975	0.94847	0.0107	7.983E-7		6
rs4491721	2:198521407	C/G	RFTN2	intron	1.010	1.00884	0.0132	0.507		7
rs58576043	2:198524149	T/C	RFTN2	intron	1.000	0.99114	0.0132	0.501		7
rs58621102	2:198528999	T/C	RFTN2	intron	0.996	0.95218	0.0106	3.994E-6		7
rs59341299	2:198489607	A/G	RFTN2	intron	0.961	1.05380	0.0108	1.216E-6		7
rs59938443	2:198497105	T/C	RFTN2	intron	1.010	0.99154	0.0132	0.5208		7
rs60582020	2:198520555	A/C	RFTN2	intron	0.988	1.01045	0.0135	0.4395		6
rs61054961	2:198494065	A/C	RFTN2	intron	0.988	1.04781	0.0107	0.00001224		7
rs61155920	2:198528881	T/C	RFTN2	intron	1.000	0.94111	0.0112	5.661E-8		7
rs61541724	2:198494111	T/C	RFTN2	intron	0.964	0.94356	0.0112	2.361E-7		6
rs62277866	2:198497735	A/T	RFTN2	intron	0.672	1.14947	0.0590	0.01825		7
rs6434934	2:198437386	C/G	RFTN2	intron	0.995	1.07176	0.0111	4.969E-10		7
rs6708239	2:198525084	A/G	RFTN2	intron	1.000	1.06247	0.0112	5.925E-8		6
rs6714697	2:198484486	T/C	RFTN2	intron	0.901	0.93239	0.0114	7.677E-10		6
rs6715105	2:198445601	T/C	RFTN2	intron	0.951	1.07026	0.0113	1.79E-9		6
rs6719483	2:198472886	A/G	RFTN2	intron	0.995	1.07037	0.0112	1.138E-9		7
rs6719729	2:198480072	A/G	RFTN2	intron	0.996	0.93435	0.0112	1.186E-9		4
rs6723768	2:198474218	A/G	RFTN2	intron	0.955	1.07186	0.0113	7.793E-10		6
rs6728904	2:198492837	T/C	RFTN2	intron	0.989	0.95638	0.0107	0.00002903		1b
rs6737060	2:198524885	C/G	RFTN2	intron	1.000	0.94111	0.0112	5.673E-8		7
rs6741205	2:198525997	C/G	RFTN2	intron	1.000	0.94111	0.0112	5.655E-8		7
rs6741314	2:198526088	A/G	RFTN2	intron	1.000	0.94120	0.0112	5.901E-8		7
rs67492914	2:198523402	T/G	RFTN2	intron	1.000	1.06247	0.0112	5.722E-8		7
rs6757632	2:198530266	T/C	RFTN2	intron	0.998	0.94148	0.0112	6.872E-8		7
rs71422661	2:198498052	A/T	RFTN2	intron	0.620	0.92109	0.0402	0.04079		5
rs72916912	2:198481177	A/G	RFTN2	intron	0.721	0.94403	0.0183	0.001635		6
rs72916919	2:198492316	T/G	RFTN2	intron	0.975	1.05117	0.0107	3.285E-6		7
rs74265509	2:198447538	A/G	RFTN2	intron	0.953	0.88994	0.0544	0.03206		5
rs74265511	2:198494782	T/C	RFTN2	intron	1.010	0.99134	0.0132	0.5116		5
rs74563586	2:198438300	A/G	RFTN2	intron	0.958	0.89199	0.0546	0.03629		6
rs74843358	2:198536382	A/G	RFTN2	intron	0.615	1.09341	0.0765	0.2435		7
rs74965164	2:198499162	T/C	RFTN2	intron	1.000	0.99183	0.0132	0.5353		6
rs75236704	2:198486543	T/C	RFTN2	intron	0.660	1.10749	0.0536	0.05692		7
rs75415672	2:198535679	A/G	RFTN2	intron	0.967	0.98965	0.0136	0.447		5
rs75505984	2:198477244	T/C	RFTN2	intron	0.699	0.97775	0.0290	0.4389		7
rs75619425	2:198537281	A/G	RFTN2	intron	1.000	1.01015	0.0132	0.4435		5
rs7601762	2:198529237	T/G	RFTN2	intron	0.999	0.95237	0.0106	4.217E-6		7
rs76413582	2:198518951	A/T	RFTN2	intron	0.756	1.01552	0.0515	0.7644		5
rs76481887	2:198538531	T/C	RFTN2	intron	0.764	0.94829	0.0503	0.2914		5
rs76637837	2:198529496	A/G	RFTN2	intron	1.000	0.99124	0.0132	0.5037		7
rs77353793	2:198470546	T/C	RFTN2	intron	0.992	0.99611	0.0138	0.7756		5
rs77357334	2:198455607	A/G	RFTN2	intron	0.998	0.99621	0.0139	0.7833		7
rs77368480	2:198474908	T/C	RFTN2	intron	0.946	0.93342	0.0113	1.096E-9		7
rs77442629	2:198460748	T/G	RFTN2	coding-synon	0.670	1.08926	0.0630	0.1749		5
rs77615390	2:198454790	T/C	RFTN2	intron	1.000	0.98906	0.0135	0.4162		7
rs77773624	2:198514845	A/G	RFTN2	intron	1.010	0.99064	0.0132	0.4774		6
rs77812118	2:198540710	A/G	RFTN2	near-gene-5,untranslated-5	0.791	0.93679	0.0285	0.02187		5
rs77946222	2:198533251	T/C	RFTN2	intron	1.000	0.99084	0.0132	0.4854		5
rs78002594	2:198467113	A/T	RFTN2	intron	0.992	1.00321	0.0140	0.8209		6
rs78198610	2:198522769	T/C	RFTN2	intron	1.000	1.00793	0.0132	0.5506		6
rs78901536	2:198493818	C/G	RFTN2	intron	0.958	1.00702	0.0140	0.6149		6
rs78912234	2:198525938	T/C	RFTN2	intron	0.667	0.99760	0.0378	0.9494		6
rs79647329	2:198477131	A/G	RFTN2	intron	0.714	1.15754	0.0422	0.0005273		7
rs79745588	2:198516835	A/G	RFTN2	intron	1.010	0.99094	0.0132	0.4922		6
rs79845692	2:198523541	T/C	RFTN2	intron	1.010	1.00884	0.0132	0.5068		7
rs80172713	2:198508044	T/C	RFTN2	intron	1.010	1.00914	0.0132	0.4906		7
rs9967823	2:198531529	A/G	RFTN2	intron	1.000	1.06258	0.0112	5.46E-8		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information