RTN4R

Basic Information

Gene Symbol	RTN4R
Entrez Id	65078
Position	chr22:20228938..20255816
Description	reticulon 4 receptor
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1005863	22:20240999	A/G	RTN4R	intron	0.824	1.00230	0.0135	0.8624		5
rs1567871	22:20241160	T/C	RTN4R	intron	0.826	1.00220	0.0134	0.8675		7
rs2871065	22:20256804	C/G	RTN4R	near-gene-5	0.601	1.02511	0.0149	0.09602		5
rs34909867	22:20233231	T/C	RTN4R	intron	0.680	1.02255	0.0255	0.3816		5
rs4819879	22:20245174	T/C	RTN4R	intron	0.742	1.00692	0.0138	0.6143		5
rs5993943	22:20257029	A/G	RTN4R	near-gene-5	0.605	0.97648	0.0148	0.1069		5
rs67210955	22:20251543	I2/D	RTN4R	intron	0.664	0.95256	0.0495	0.3262		-
rs696881	22:20234813	C/G	RTN4R	intron	0.784	0.99690	0.0123	0.7999		4
rs701421	22:20246081	A/T	RTN4R	intron	0.611	1.01147	0.0136	0.4026		4
rs701422	22:20243769	A/C	RTN4R	intron	0.643	0.95285	0.0282	0.08705		5
rs701423	22:20243305	T/C	RTN4R	intron	0.701	1.00491	0.0139	0.7275		5
rs701424	22:20240231	T/C	RTN4R	intron	0.744	1.00602	0.0123	0.6263		7
rs701427	22:20233268	A/C	RTN4R	intron	0.800	0.99780	0.0123	0.8584		5
rs7287730	22:20241436	A/G	RTN4R	intron	0.662	1.01857	0.0179	0.3043		6
rs73153000	22:20251925	A/G	RTN4R	intron	0.605	0.97638	0.0156	0.1244		5
rs8136268	22:20244815	A/G	RTN4R	intron	0.676	1.04289	0.0196	0.03187		4
rs854928	22:20251954	A/G	RTN4R	intron	0.665	0.95628	0.0496	0.3682		5
rs854971	22:20233429	T/C	RTN4R	intron	0.801	0.99900	0.0123	0.9364		5
rs855050	22:20248391	A/G	RTN4R	intron	0.729	1.00783	0.0125	0.5349		5
rs855051	22:20248713	A/G	RTN4R	intron	0.724	0.99412	0.0126	0.6419		5
rs855052	22:20249421	A/G	RTN4R	intron	0.721	1.00552	0.0126	0.66		5
rs855053	22:20249551	A/C	RTN4R	intron	0.721	0.99352	0.0126	0.6077		5
rs855054	22:20249807	A/G	RTN4R	intron	0.718	1.00562	0.0126	0.6583		5
rs855056	22:20252512	A/G	RTN4R	intron	0.702	1.00491	0.0128	0.7009		5
rs855077	22:20239081	T/G	RTN4R	intron	0.669	1.00150	0.0140	0.9142		5
rs887765	22:20234817	T/C	RTN4R	intron	0.790	0.99730	0.0126	0.8307		2b
rs9606293	22:20233865	A/G	RTN4R	intron	0.679	1.06962	0.0331	0.04192		5
rs9606294	22:20234525	T/C	RTN4R	intron	0.693	1.03852	0.0195	0.05294		4
rs9606296	22:20244616	T/C	RTN4R	intron	0.689	1.04446	0.0196	0.02636		5
rs9606297	22:20244723	T/C	RTN4R	intron	0.686	1.04509	0.0196	0.02435		5
rs9618765	22:20256310	T/G	RTN4R	near-gene-5	0.679	1.01562	0.0205	0.4496		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
18668038	GWAS	3391 cases; 3181 controls
18511947	GWAS	359 cases; 718 controls
19181681	GWAS	471 cases; 2792 controls
Reference	Study type	Sample size

eQTL Information