SCG2

Basic Information

Gene Symbol	SCG2
Entrez Id	7857
Position	chr2:224461658..224467217
Description	secretogranin II
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs16864975	2:224463164	A/G	SCG2	coding-synon	0.901	0.99183	0.0229	0.7205		6
rs2230168	2:224462056	T/G	SCG2	untranslated-3	0.952	0.96358	0.0420	0.376		4
rs36043001	2:224462310	A/G	SCG2	missense	0.821	1.06247	0.0359	0.09151		7
rs41438247	2:224466116	A/G	SCG2	intron	0.960	0.96291	0.0430	0.3798		7
rs721233	2:224462714	A/G	SCG2	coding-synon	0.952	0.96561	0.0421	0.4058		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information