SHMT2

Basic Information

Gene Symbol	SHMT2
Entrez Id	6472
Position	chr12:57623356..57628718
Description	serine hydroxymethyltransferase 2 (mitochondrial)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs117244382	12:57627525	A/G	SHMT2	intron	0.844	1.00985	0.0314	0.7563		5
rs2229716	12:57626582	A/G	SHMT2	coding-synon,ncRNA	0.690	0.99402	0.0343	0.8601		7
rs2229717	12:57627074	T/G	SHMT2	coding-synon,ncRNA	0.903	1.07929	0.0262	0.003577		6
rs34095989	12:57627717	A/G	SHMT2	intron	0.954	1.01867	0.0112	0.1005		5
rs74093117	12:57625950	A/G	SHMT2	intron	0.768	0.93333	0.0545	0.2058		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information