SLC12A4

Basic Information

Gene Symbol	SLC12A4
Entrez Id	6560
Position	chr16:67977377..68002597
Description	solute carrier family 12 (potassium/chloride transporter), member 4
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs116856853	16:67984804	A/G	SLC12A4	intron	0.997	1.08480	0.0260	0.001737		5
rs116996900	16:67988921	A/G	SLC12A4	intron	0.721	0.99322	0.0443	0.8785		5
rs117213038	16:67981697	T/C	SLC12A4	intron	0.747	1.00592	0.0623	0.9245		5
rs117838106	16:67998850	A/G	SLC12A4	intron,near-gene-5	0.820	0.98521	0.0611	0.8068		4
rs118000276	16:67988447	A/G	SLC12A4	intron	0.801	0.93044	0.0498	0.1475		5
rs11860125	16:67980969	C/G	SLC12A4	coding-synon	0.987	1.07983	0.0241	0.001447		5
rs143244172	16:67984104	A/G	SLC12A4	intron	0.792	1.08426	0.0570	0.1552		-
rs147329698	16:68001555	A/G	SLC12A4	intron,near-gene-5	0.761	1.01187	0.0376	0.7533		-
rs148081073	16:67990669	T/C	SLC12A4	intron	0.833	0.92969	0.0457	0.1107		-
rs17851876	16:67979423	T/G	SLC12A4	coding-synon,near-gene-5	0.734	0.99930	0.0245	0.9785		5
rs2292318	16:67985706	T/C	SLC12A4	intron	0.984	1.05464	0.0155	0.0005776		1f
rs255057	16:67986712	T/C	SLC12A4	intron	0.847	0.97414	0.0203	0.1971		5
rs28655136	16:68001447	T/C	SLC12A4	intron,near-gene-5	0.997	0.92376	0.0255	0.001871		4
rs3785098	16:67993643	T/C	SLC12A4	intron	0.988	0.93904	0.0135	3.456E-6		2b
rs3785100	16:67997920	T/C	SLC12A4	intron,missense	0.988	0.94866	0.0154	0.0006434		4
rs76074266	16:67979541	C/G	SLC12A4	intron,near-gene-5	0.741	1.07681	0.0281	0.008498		5
rs76359116	16:67997703	C/G	SLC12A4	intron	0.997	1.08318	0.0255	0.001741		4
rs76481097	16:68001309	T/C	SLC12A4	intron,near-gene-5	0.764	1.01106	0.0468	0.8143		5
rs78018091	16:67995294	T/G	SLC12A4	intron	0.865	1.10164	0.0396	0.01462		5
rs78335263	16:67998187	A/G	SLC12A4	intron,near-gene-5	0.997	1.08253	0.0255	0.001855		5
rs78818722	16:67991972	T/C	SLC12A4	intron	0.770	1.02276	0.0247	0.3619		5
rs9928014	16:67991427	T/C	SLC12A4	intron	0.996	0.92376	0.0255	0.001866		6
rs9934405	16:67989976	A/C	SLC12A4	intron	0.971	1.06545	0.0136	3.265E-6		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information