SLC32A1

Basic Information

Gene Symbol	SLC32A1
Entrez Id	140679
Position	chr20:37353105..37358015
Description	solute carrier family 32 (GABA vesicular transporter), member 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs112347804	20:37355158	C/G	SLC32A1	intron	0.950	0.98472	0.0463	0.7389		5
rs13042447	20:37352849	T/C	SLC32A1	near-gene-5	0.973	0.97326	0.0107	0.01166		2a
rs143253704	20:37354628	C/G	SLC32A1	intron	0.838	0.88950	0.0476	0.01385		-
rs34068158	20:37355417	T/C	SLC32A1	intron	0.916	1.00803	0.0170	0.6386		4
rs4328688	20:37352558	A/C	SLC32A1	near-gene-5	0.978	1.07724	0.0169	0.00001069		5
rs61169612	20:37352759	C/G	SLC32A1	near-gene-5	0.941	1.04802	0.0255	0.06636		5
rs6128821	20:37354805	A/C	SLC32A1	intron	0.968	0.97258	0.0108	0.009715		4
rs6128822	20:37354829	A/C	SLC32A1	intron	0.963	1.04886	0.0127	0.000173		4
rs75035881	20:37352129	T/G	SLC32A1	near-gene-5	0.953	0.98462	0.0462	0.737		4
rs8118790	20:37352112	A/G	SLC32A1	near-gene-5	0.946	0.99740	0.0160	0.8699		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information