SLC45A1

Basic Information

Gene Symbol	SLC45A1
Entrez Id	50651
Position	chr1:8384390..8404227
Description	solute carrier family 45, member 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10449318	1:8389894	T/C	SLC45A1	intron	0.944	0.94120	0.0124	9.604E-7		4
rs10779701	1:8379626	A/G	SLC45A1	intron	0.981	1.04112	0.0108	0.0001987		5
rs10864349	1:8392610	T/C	SLC45A1	intron	0.855	0.98590	0.0134	0.2894		7
rs10864350	1:8394796	A/G	SLC45A1	intron	0.949	1.00582	0.0119	0.6241		6
rs111915429	1:8402221	T/C	SLC45A1	intron	0.930	0.98000	0.0149	0.1737		6
rs111990648	1:8400465	A/G	SLC45A1	intron	0.847	1.03107	0.0344	0.3736		7
rs112673896	1:8380054	A/C	SLC45A1	intron	0.966	1.00030	0.0133	0.9797		7
rs11583580	1:8381159	A/G	SLC45A1	intron	0.979	0.94346	0.0131	9.191E-6		5
rs11584095	1:8387779	A/G	SLC45A1	intron	0.967	0.98718	0.0144	0.3699		5
rs11590467	1:8392520	T/C	SLC45A1	intron	0.936	0.96618	0.0110	0.001694		7
rs116024147	1:8387069	T/C	SLC45A1	intron	0.857	1.18946	0.0455	0.0001384		7
rs116623008	1:8382478	A/G	SLC45A1	intron	0.737	0.98206	0.0306	0.5544		6
rs12038661	1:8398834	A/G	SLC45A1	intron	0.978	1.00250	0.0123	0.8375		6
rs12039434	1:8399193	A/G	SLC45A1	intron	0.979	1.00351	0.0123	0.7783		5
rs12132135	1:8382607	A/G	SLC45A1	intron	0.983	1.05686	0.0131	0.00002287		6
rs12132571	1:8393552	C/G	SLC45A1	intron	0.956	1.03925	0.0462	0.4041		7
rs12141444	1:8389153	T/C	SLC45A1	intron	0.802	1.04980	0.0199	0.01444		5
rs12142465	1:8390054	A/C	SLC45A1	intron	0.942	0.93857	0.0124	3.347E-7		5
rs12143547	1:8391251	T/C	SLC45A1	intron	0.945	0.94290	0.0123	1.916E-6		7
rs12402088	1:8401588	T/C	SLC45A1	intron	0.935	1.00813	0.0110	0.4619		7
rs12565834	1:8390246	T/C	SLC45A1	intron	0.950	1.06258	0.0123	8.1E-7		5
rs12711517	1:8394236	T/C	SLC45A1	intron	0.947	1.03448	0.0110	0.002048		5
rs138843120	1:8404462	T/C	SLC45A1	near-gene-3	0.675	0.99710	0.0566	0.9593		-
rs142137361	1:8402887	A/G	SLC45A1	intron	0.919	0.97521	0.0112	0.0244		-
rs142956849	1:8391041	T/C	SLC45A1	intron	0.665	0.91576	0.0477	0.06505		-
rs143286925	1:8396982	A/T	SLC45A1	intron	0.868	1.10407	0.0444	0.02579		-
rs146031759	1:8384861	A/T	SLC45A1	intron	0.863	1.05749	0.0462	0.2264		-
rs181045104	1:8390034	A/G	SLC45A1	intron	0.724	1.09297	0.0668	0.1834		-
rs182519426	1:8382137	T/G	SLC45A1	intron	0.607	1.03200	0.0394	0.4235		-
rs187290112	1:8398719	T/C	SLC45A1	intron	0.863	1.13883	0.0591	0.02777		-
rs2289730	1:8390213	A/G	SLC45A1	intron	0.607	0.98246	0.0385	0.6461		5
rs2289731	1:8390888	A/G	SLC45A1	coding-synon	0.952	0.95247	0.0118	0.00003817		5
rs2292242	1:8385059	T/C	SLC45A1	intron	0.980	1.04833	0.0111	0.00001973		5
rs2305016	1:8395441	T/C	SLC45A1	intron	0.956	0.99283	0.0109	0.5099		5
rs35167234	1:8393871	T/C	SLC45A1	intron	0.927	1.05844	0.0125	5.882E-6		7
rs3844030	1:8397058	A/G	SLC45A1	intron	0.984	1.00280	0.0123	0.8176		7
rs3994814	1:8397518	A/G	SLC45A1	intron	0.978	0.99591	0.0123	0.7376		7
rs3994820	1:8400277	T/C	SLC45A1	intron	0.855	1.04991	0.0560	0.3853		5
rs3994821	1:8397522	A/G	SLC45A1	intron	0.981	0.99700	0.0123	0.804		7
rs4908499	1:8403112	A/T	SLC45A1	intron	0.937	0.96773	0.0110	0.002788		5
rs4908750	1:8380971	A/G	SLC45A1	intron	0.978	0.94422	0.0131	0.00001181		6
rs4908751	1:8392592	A/G	SLC45A1	intron	0.923	1.06046	0.0121	1.108E-6		6
rs4908753	1:8394816	T/C	SLC45A1	intron	0.857	0.95399	0.0154	0.002178		7
rs58286176	1:8392548	A/G	SLC45A1	intron	0.947	0.99800	0.0127	0.8723		7
rs61747125	1:8395674	T/C	SLC45A1	intron	0.967	1.04112	0.0464	0.3851		5
rs61785826	1:8379063	T/G	SLC45A1	intron	0.852	1.00200	0.0146	0.8895		7
rs66504733	1:8395122	T/C	SLC45A1	intron	0.955	1.00652	0.0109	0.5473		5
rs6690548	1:8403011	A/G	SLC45A1	intron	0.904	0.99860	0.0144	0.9199		6
rs72635791	1:8376815	C/G	SLC45A1	near-gene-5	0.854	1.04456	0.0335	0.1936		5
rs72635792	1:8378599	C/G	SLC45A1	intron	0.976	1.04289	0.0109	0.00011		5
rs72635795	1:8381764	A/G	SLC45A1	intron	0.971	0.99740	0.0132	0.8441		5
rs72635796	1:8383987	C/G	SLC45A1	intron	0.974	0.98600	0.0144	0.3277		4
rs72635798	1:8385004	A/G	SLC45A1	intron	0.975	0.98629	0.0144	0.3377		5
rs72635800	1:8389715	A/G	SLC45A1	intron	0.949	0.98876	0.0145	0.4361		5
rs72635801	1:8391265	A/G	SLC45A1	intron	0.811	0.98059	0.0283	0.4894		7
rs72636904	1:8402594	T/C	SLC45A1	intron	0.807	0.94469	0.0357	0.1109		2b
rs72636907	1:8403155	T/C	SLC45A1	intron	0.826	1.03324	0.0180	0.06856		5
rs7518563	1:8393218	A/G	SLC45A1	intron	0.943	1.03490	0.0109	0.00165		5
rs7535752	1:8395560	T/G	SLC45A1	missense	0.950	0.98246	0.0145	0.2238		5
rs75410574	1:8403317	T/C	SLC45A1	intron	0.639	1.05390	0.0770	0.4954		5
rs7552012	1:8393145	T/C	SLC45A1	intron	0.942	0.96638	0.0109	0.001733		5
rs75740297	1:8394882	T/C	SLC45A1	intron	0.829	0.88524	0.0411	0.003037		5
rs76419978	1:8398288	C/G	SLC45A1	intron	0.848	0.97716	0.0370	0.5334		5
rs76546460	1:8381412	C/G	SLC45A1	intron	0.979	0.94356	0.0131	9.352E-6		5
rs78921373	1:8384228	A/G	SLC45A1	intron	0.855	1.09133	0.0600	0.1455		5
rs79500154	1:8403393	A/G	SLC45A1	intron	0.887	1.00783	0.0363	0.8299		2b
rs80046868	1:8389154	A/G	SLC45A1	intron	0.939	0.93847	0.0125	3.511E-7		5
rs9628987	1:8386730	A/C	SLC45A1	intron	0.973	1.01481	0.0143	0.3039		6
rs9645401	1:8386658	A/G	SLC45A1	intron	0.980	1.05855	0.0131	0.00001408		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information