SLC6A4

Basic Information

Gene Symbol	SLC6A4
Entrez Id	6532
Position	chr17:28523376..28562954
Description	solute carrier family 6 (neurotransmitter transporter), member 4
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs11080121	17:28528842	T/C	SLC6A4	intron	0.997	0.98138	0.0107	0.07788		7
rs11080122	17:28547335	T/C	SLC6A4	intron	0.997	0.99681	0.0137	0.813		3a
rs113464413	17:28557164	A/G	SLC6A4	intron	0.685	0.97015	0.0135	0.02462		6
rs11657536	17:28529242	A/G	SLC6A4	intron	0.833	1.01674	0.0339	0.6245		7
rs117390397	17:28561092	A/T	SLC6A4	intron	0.670	0.96715	0.0411	0.4167		5
rs118189300	17:28526585	T/C	SLC6A4	intron	0.676	0.96822	0.0505	0.5226		7
rs11872020	17:28553489	A/G	SLC6A4	intron	0.921	0.96948	0.0115	0.006984		4
rs12150214	17:28550888	C/G	SLC6A4	intron	0.998	0.99700	0.0137	0.8284		5
rs12449783	17:28527653	A/C	SLC6A4	intron	1.000	0.98187	0.0106	0.08622		5
rs12450956	17:28529025	A/G	SLC6A4	intron	0.995	0.98167	0.0107	0.08317		6
rs143859029	17:28557140	A/G	SLC6A4	intron	0.620	1.03076	0.0162	0.06126		-
rs146214704	17:28557179	C/G	SLC6A4	intron	0.841	0.97414	0.0589	0.6565		-
rs149699290	17:28555095	A/G	SLC6A4	intron	0.814	0.98393	0.0611	0.7914		-
rs16965628	17:28555425	C/G	SLC6A4	intron	0.866	0.97083	0.0248	0.2323		5
rs183182834	17:28553591	A/G	SLC6A4	intron	0.703	1.00672	0.0612	0.9127		-
rs191919771	17:28553815	T/G	SLC6A4	intron	0.823	1.03334	0.0614	0.5936		-
rs1972305	17:28533880	T/C	SLC6A4	intron	0.986	0.97638	0.0108	0.02669		7
rs2066713	17:28551665	A/G	SLC6A4	intron	1.000	0.97365	0.0110	0.01523		5
rs28914827	17:28549809	T/C	SLC6A4	intron	0.691	0.93763	0.0492	0.1907		4
rs28914829	17:28542546	A/G	SLC6A4	intron	0.826	1.01471	0.0351	0.6782		7
rs34388196	17:28534469	A/G	SLC6A4	intron	0.989	0.97756	0.0107	0.03416		6
rs34871173	17:28549725	A/G	SLC6A4	intron	0.844	1.02675	0.0590	0.6541		4
rs35600349	17:28541550	T/C	SLC6A4	intron	0.992	0.99671	0.0138	0.8123		6
rs35659820	17:28534531	C/G	SLC6A4	intron	0.991	1.02542	0.0108	0.01996		6
rs3794809	17:28531258	T/C	SLC6A4	intron	0.991	1.02153	0.0107	0.04643		5
rs3813034	17:28524804	A/C	SLC6A4	untranslated-3	1.000	0.98167	0.0106	0.08109		6
rs4251417	17:28551858	T/C	SLC6A4	intron	0.822	1.00672	0.0193	0.7306		5
rs4325622	17:28526475	T/C	SLC6A4	intron	1.000	0.98187	0.0106	0.08414		6
rs4340379	17:28542211	A/C	SLC6A4	intron	0.975	0.99890	0.0138	0.9386		7
rs4514736	17:28553639	A/C	SLC6A4	intron	0.919	0.97054	0.0112	0.007343		5
rs4583306	17:28538715	A/G	SLC6A4	intron	0.994	0.97375	0.0108	0.01347		1f
rs4636964	17:28528056	C/G	SLC6A4	intron	0.901	0.99283	0.0283	0.7986		5
rs7217065	17:28533735	T/C	SLC6A4	intron	0.683	0.97990	0.0143	0.156		6
rs8066602	17:28523085	T/C	SLC6A4	untranslated-3	1.000	0.98305	0.0106	0.1079		4
rs8066731	17:28523121	T/C	SLC6A4	untranslated-3	1.000	0.98236	0.0106	0.09242		3a
rs8071583	17:28531026	A/T	SLC6A4	intron	0.841	1.00743	0.0335	0.8245		5
rs8071667	17:28552773	T/C	SLC6A4	intron	0.960	0.99661	0.0142	0.8115		4
rs8073965	17:28559182	T/G	SLC6A4	intron	0.671	1.07144	0.0342	0.04376		2b
rs8076005	17:28547210	A/G	SLC6A4	intron	0.989	1.00582	0.0136	0.6721		1f
rs8081028	17:28523314	A/C	SLC6A4	untranslated-3	0.975	1.00662	0.0324	0.8398		6
rs9303628	17:28527228	T/C	SLC6A4	intron	1.000	0.98236	0.0106	0.09326		2b
rs9895500	17:28536587	C/G	SLC6A4	intron	0.974	1.01867	0.0309	0.5494		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
22118685	GWAS	235 cases; 191 controls
Reference	Study type	Sample size

eQTL Information