SMDT1

Basic Information

Gene Symbol	SMDT1
Entrez Id	91689
Position	chr22:42475695..42480288
Description	single-pass membrane protein with aspartate-rich tail 1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs139043947	22:42480421	A/G	SMDT1	near-gene-3	0.809	1.03221	0.0294	0.282		-
rs2071711	22:42477650	C/G	SMDT1	intron	0.994	0.94478	0.0114	6.48E-7		7
rs62238591	22:42480007	T/C	SMDT1	untranslated-3	0.848	1.02419	0.0339	0.4801		7
rs78251806	22:42476770	I2/D	SMDT1	intron	0.938	0.94876	0.0120	0.00001277		-
rs9607875	22:42479267	T/C	SMDT1	untranslated-3	0.995	1.15824	0.0519	0.004649		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information