SMIM4

Basic Information

Gene Symbol	SMIM4
Entrez Id	440957
Position	chr3:52570002..52574586
Description	small integral membrane protein 4
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs114300100	3:52579293	C/G	SMIM4	near-gene-3	0.736	1.02727	0.0287	0.3488		5
rs13076398	3:52573096	A/G	SMIM4	intron	0.998	0.95695	0.0106	0.00003034		3a
rs4687626	3:52569098	A/G	SMIM4	intron,near-gene-5	0.997	0.95686	0.0106	0.00002922		1f
rs58924550	3:52570496	A/G	SMIM4	intron,near-gene-5	0.997	0.96870	0.0352	0.3669		4
rs60415551	3:52572648	A/T	SMIM4	intron	0.999	1.06983	0.0390	0.08343		6
rs60611300	3:52569949	T/C	SMIM4	intron,near-gene-5	0.999	1.03355	0.0351	0.3479		4
rs60823713	3:52573101	A/G	SMIM4	intron	0.999	1.06972	0.0390	0.08406		3a
rs60916588	3:52570765	C/G	SMIM4	coding-synon,near-gene-5,untranslated-5	0.998	1.07015	0.0390	0.08207		4
rs62256903	3:52573844	A/G	SMIM4	intron	0.978	0.95456	0.0107	0.00001347		7
rs6445528	3:52572447	A/G	SMIM4	intron	0.996	1.04196	0.0105	0.00009364		6
rs6774097	3:52569480	A/C	SMIM4	intron,near-gene-5	0.998	1.02696	0.0347	0.4437		5
rs73837804	3:52574012	C/G	SMIM4	intron	0.998	1.07219	0.0408	0.08699		6
rs74620519	3:52573350	A/G	SMIM4	intron	0.805	0.94526	0.0376	0.1342		7
rs76685449	3:52570330	T/G	SMIM4	intron,near-gene-5	0.837	1.00401	0.0418	0.923		2b
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information