SNX19

Basic Information

Gene Symbol	SNX19
Entrez Id	399979
Position	chr11:130745766..130786382
Description	sorting nexin 19
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1050071	11:130747231	C/G	SNX19	untranslated-3	1.000	1.05707	0.0106	1.469E-7		6
rs1050078	11:130746146	T/C	SNX19	untranslated-3	0.995	1.05348	0.0107	1.129E-6		5
rs1050081	11:130784647	C/G	SNX19	intron,ncRNA,missense	0.996	1.07648	0.0131	1.734E-8		7
rs10732869	11:130762550	T/C	SNX19	intron	0.995	0.99671	0.0110	0.7669		7
rs10732870	11:130762569	A/G	SNX19	intron	0.995	0.99671	0.0110	0.7672		6
rs10736588	11:130762505	C/G	SNX19	intron	0.996	1.00351	0.0110	0.7528		7
rs10736589	11:130762529	A/G	SNX19	intron	0.996	1.00361	0.0110	0.7435		7
rs10736590	11:130763152	C/G	SNX19	intron	0.996	0.99671	0.0110	0.7624		6
rs10736591	11:130766532	T/C	SNX19	intron	1.000	1.00924	0.0111	0.4087		7
rs10750451	11:130761615	A/T	SNX19	intron	0.996	1.00351	0.0110	0.752		6
rs10750452	11:130762961	T/C	SNX19	intron	0.996	1.00321	0.0110	0.7686		2b
rs10750453	11:130762970	A/G	SNX19	intron	0.996	0.99681	0.0110	0.7689		2b
rs10750454	11:130764540	A/T	SNX19	intron,near-gene-3	0.959	1.05432	0.0112	2.348E-6		4
rs10791103	11:130757161	A/G	SNX19	intron	0.991	0.94573	0.0106	1.398E-7		7
rs10894274	11:130751477	T/C	SNX19	intron	0.946	1.02521	0.0210	0.2365		7
rs10894275	11:130756251	T/C	SNX19	intron	0.993	0.94526	0.0106	1.098E-7		7
rs10894276	11:130759133	A/G	SNX19	intron	0.631	1.01613	0.0227	0.4807		6
rs10894277	11:130763454	A/C	SNX19	intron	0.996	1.00331	0.0110	0.7618		7
rs10894279	11:130771768	T/C	SNX19	intron	0.991	1.05012	0.0108	6.286E-6		7
rs10894280	11:130775456	C/G	SNX19	intron,near-gene-3	1.000	1.00914	0.0111	0.4112		4
rs10894281	11:130775479	A/G	SNX19	intron,near-gene-3	1.000	1.00965	0.0111	0.3853		4
rs11222371	11:130745719	T/C	SNX19	intron,near-gene-3	0.997	0.94990	0.0107	1.517E-6		7
rs11222373	11:130749256	A/C	SNX19	intron	0.998	0.97229	0.0255	0.2715		7
rs11222377	11:130760192	A/C	SNX19	intron	0.983	1.02881	0.0222	0.1994		7
rs11222379	11:130764449	T/G	SNX19	intron,near-gene-3	0.913	0.97219	0.0187	0.1316		2a
rs11222387	11:130779787	T/G	SNX19	intron	0.975	1.02881	0.0223	0.2025		4
rs117260465	11:130784886	T/C	SNX19	intron,ncRNA,missense	0.675	0.90919	0.0594	0.1089		5
rs117380486	11:130780828	A/G	SNX19	intron	0.999	0.92867	0.0131	1.478E-8		6
rs117702486	11:130746760	T/C	SNX19	untranslated-3	0.865	0.96137	0.0414	0.3416		7
rs118027083	11:130784011	A/T	SNX19	intron	0.936	0.96928	0.0260	0.2289		5
rs12049830	11:130763513	A/G	SNX19	intron	0.934	0.96079	0.0329	0.2243		7
rs12049886	11:130763340	A/C	SNX19	intron	0.953	1.05454	0.0388	0.1707		6
rs12146655	11:130782649	A/G	SNX19	intron	0.974	0.97093	0.0223	0.1863		3a
rs12278204	11:130754879	C/G	SNX19	intron	0.810	0.99144	0.0234	0.7135		5
rs12280661	11:130762498	T/C	SNX19	intron	0.891	1.01765	0.0210	0.4024		6
rs12365680	11:130749059	A/G	SNX19	intron	0.997	0.95142	0.0107	3.218E-6		7
rs12420822	11:130781675	T/C	SNX19	intron	0.999	1.07681	0.0131	1.488E-8		7
rs12420834	11:130781767	A/C	SNX19	intron	0.999	1.07681	0.0131	1.485E-8		5
rs12420847	11:130781685	C/G	SNX19	intron	0.999	1.07681	0.0131	1.487E-8		6
rs1368852	11:130768264	T/C	SNX19	intron	0.997	0.99312	0.0111	0.5334		5
rs137903114	11:130770585	T/C	SNX19	intron	0.921	0.99690	0.0399	0.9377		-
rs139042752	11:130785852	T/G	SNX19	intron,ncRNA,untranslated-5	0.906	0.94535	0.0393	0.1529		-
rs139989165	11:130780865	A/G	SNX19	intron	0.959	0.92923	0.0138	9.54E-8		-
rs142163800	11:130763914	A/T	SNX19	intron	0.787	0.99471	0.0532	0.9206		-
rs142783173	11:130750592	A/G	SNX19	intron,missense	0.865	1.00150	0.0535	0.9776		-
rs143461767	11:130780970	A/G	SNX19	intron	0.785	0.91980	0.0185	6.133E-6		-
rs143761120	11:130758166	T/C	SNX19	intron	0.666	1.23937	0.0602	0.0003666		-
rs144492372	11:130754284	A/G	SNX19	intron	0.725	1.00341	0.0653	0.959		-
rs146680051	11:130780974	T/C	SNX19	intron	0.802	0.92358	0.0183	0.00001333		-
rs1559671	11:130779803	T/C	SNX19	intron	0.999	1.07519	0.0130	2.696E-8		4
rs1944148	11:130764848	A/G	SNX19	intron,untranslated-3	1.000	1.00823	0.0111	0.4594		5
rs1944150	11:130764903	A/T	SNX19	intron,missense	0.973	0.99054	0.0112	0.3926		5
rs1944151	11:130765031	A/G	SNX19	intron,missense	1.000	1.07756	0.0130	1.053E-8		6
rs2155749	11:130751094	T/G	SNX19	intron	1.000	0.94658	0.0106	2.038E-7		7
rs2155750	11:130751261	A/C	SNX19	intron	1.000	1.05622	0.0106	2.2E-7		7
rs2155751	11:130755240	A/G	SNX19	intron	1.000	0.94686	0.0106	2.384E-7		5
rs2155752	11:130755998	T/C	SNX19	intron	0.993	0.94535	0.0106	1.132E-7		6
rs2276096	11:130777589	T/C	SNX19	intron	1.000	0.92988	0.0130	2.418E-8		6
rs2276097	11:130777813	A/G	SNX19	intron	1.000	1.07552	0.0130	2.315E-8		7
rs2276098	11:130777886	A/G	SNX19	coding-synon,intron,ncRNA	1.000	1.07552	0.0130	2.401E-8		7
rs2282528	11:130749715	A/G	SNX19	intron	1.000	1.02214	0.0121	0.06985		7
rs2298566	11:130750642	A/C	SNX19	intron,missense	1.000	1.02245	0.0121	0.06653		7
rs3190331	11:130748131	A/G	SNX19	untranslated-3	1.000	1.05686	0.0106	1.609E-7		7
rs3190345	11:130784616	T/C	SNX19	intron,ncRNA,missense	0.996	0.92895	0.0131	1.772E-8		7
rs3198419	11:130775688	T/C	SNX19	intron,near-gene-3	1.000	0.99074	0.0111	0.4022		4
rs34333162	11:130754723	T/C	SNX19	intron	0.984	1.07832	0.0132	1.133E-8		6
rs3794132	11:130767752	C/G	SNX19	intron	0.994	0.98866	0.0113	0.3151		4
rs3794133	11:130767486	T/G	SNX19	intron	1.000	1.07767	0.0130	9.935E-9		4
rs3794135	11:130767306	T/C	SNX19	intron	1.000	1.00904	0.0111	0.416		2a
rs3794136	11:130767198	T/C	SNX19	intron	1.000	1.00894	0.0111	0.422		2b
rs3794137	11:130767087	C/G	SNX19	intron	1.000	0.99114	0.0111	0.4217		5
rs3794138	11:130767082	T/C	SNX19	intron	0.991	1.00803	0.0111	0.4706		5
rs3794139	11:130767058	T/C	SNX19	intron	1.000	1.00833	0.0111	0.452		5
rs3794140	11:130764092	T/G	SNX19	intron	0.997	1.00260	0.0107	0.8069		7
rs3794142	11:130763995	C/G	SNX19	intron	0.993	0.92747	0.0131	8.493E-9		7
rs3794143	11:130763772	T/C	SNX19	intron	0.998	0.99681	0.0110	0.7703		5
rs3829270	11:130767455	T/C	SNX19	intron	1.000	0.99134	0.0111	0.4312		2b
rs3829271	11:130753912	A/T	SNX19	intron	0.995	0.95047	0.0107	2.071E-6		7
rs4264159	11:130755784	T/G	SNX19	intron	0.993	0.94526	0.0106	1.092E-7		6
rs4337054	11:130779273	T/C	SNX19	intron	0.998	0.92997	0.0130	2.649E-8		5
rs4365063	11:130762125	T/C	SNX19	intron	0.927	0.98847	0.0112	0.301		7
rs4370948	11:130755700	A/C	SNX19	intron	0.989	1.05855	0.0106	8.125E-8		6
rs4373936	11:130776613	A/G	SNX19	coding-synon,ncRNA	1.000	1.00944	0.0111	0.3962		5
rs4402303	11:130779479	T/C	SNX19	intron	0.997	1.07541	0.0130	2.525E-8		5
rs4403815	11:130779621	T/C	SNX19	intron	0.999	1.07519	0.0130	2.698E-8		3a
rs4403816	11:130779674	T/C	SNX19	intron	0.999	1.07519	0.0130	2.698E-8		4
rs4414223	11:130776524	T/C	SNX19	ncRNA,missense	1.000	1.00934	0.0111	0.401		7
rs4420278	11:130754785	A/G	SNX19	intron	0.874	1.04415	0.0116	0.0001869		6
rs4436551	11:130755739	A/G	SNX19	intron	0.994	0.94535	0.0106	1.103E-7		7
rs4447183	11:130762124	T/C	SNX19	intron	0.928	0.98758	0.0112	0.2639		7
rs4456262	11:130755813	T/C	SNX19	intron	0.993	1.05866	0.0106	7.716E-8		7
rs4457753	11:130755575	A/G	SNX19	intron	0.997	1.05675	0.0106	1.805E-7		7
rs4459316	11:130756176	T/C	SNX19	intron	0.990	1.05792	0.0106	1.106E-7		6
rs4508210	11:130779646	A/G	SNX19	intron	0.999	0.93007	0.0130	2.693E-8		2b
rs4586174	11:130776646	A/T	SNX19	intron	0.999	0.98118	0.0119	0.1111		5
rs4600217	11:130762140	T/C	SNX19	intron	0.994	0.99671	0.0110	0.763		6
rs4643085	11:130755044	C/G	SNX19	intron	0.991	0.97599	0.0214	0.2571		5
rs58717100	11:130754522	A/G	SNX19	intron	0.979	0.97336	0.0222	0.2239		6
rs60290660	11:130782344	A/G	SNX19	intron	0.999	1.07681	0.0131	1.492E-8		5
rs60550066	11:130782569	A/G	SNX19	intron	0.999	0.92876	0.0131	1.5E-8		4
rs61734874	11:130784488	A/G	SNX19	coding-synon,intron,ncRNA	0.996	0.92895	0.0131	1.754E-8		6
rs61736752	11:130784707	T/C	SNX19	coding-synon,intron,ncRNA	0.996	1.07638	0.0131	1.787E-8		5
rs61736758	11:130784694	T/C	SNX19	intron,ncRNA,missense	0.996	1.07648	0.0131	1.74E-8		5
rs61759531	11:130773279	C/G	SNX19	missense	0.623	1.07832	0.0557	0.1755		7
rs61909161	11:130776556	T/C	SNX19	coding-synon,ncRNA	0.868	1.06609	0.0216	0.003023		6
rs61910788	11:130751230	T/C	SNX19	intron	0.896	0.96628	0.0358	0.3378		7
rs62621284	11:130784396	A/G	SNX19	intron,ncRNA,missense	0.997	1.07648	0.0131	1.739E-8		7
rs6421608	11:130762035	A/G	SNX19	intron	0.991	0.99700	0.0110	0.7848		7
rs6421609	11:130762057	A/G	SNX19	intron	0.995	0.99700	0.0110	0.784		7
rs643793	11:130765729	T/C	SNX19	intron	0.783	1.00130	0.0245	0.9585		7
rs6590520	11:130747386	C/G	SNX19	untranslated-3	1.000	1.05707	0.0106	1.479E-7		7
rs6590521	11:130756835	A/C	SNX19	intron	0.987	0.98020	0.0215	0.3509		4
rs6590522	11:130760874	A/G	SNX19	intron	0.996	0.99651	0.0110	0.7523		6
rs6590523	11:130761685	A/C	SNX19	intron	0.995	0.99651	0.0110	0.7491		6
rs6590524	11:130761890	C/G	SNX19	intron	0.995	0.99651	0.0110	0.7468		6
rs6590526	11:130765387	A/G	SNX19	intron	1.000	0.99144	0.0111	0.4373		7
rs6590527	11:130765462	T/G	SNX19	intron	1.000	0.99114	0.0111	0.4196		7
rs6590528	11:130765484	T/C	SNX19	intron	0.936	1.01643	0.0112	0.1462		7
rs6590529	11:130765485	A/G	SNX19	intron	0.944	0.98462	0.0112	0.1657		7
rs6590530	11:130765637	A/T	SNX19	intron	1.000	0.99094	0.0111	0.4122		5
rs6590531	11:130765706	A/G	SNX19	intron	1.000	1.00934	0.0111	0.4008		7
rs6590532	11:130765723	C/G	SNX19	intron	1.000	1.00924	0.0111	0.4056		7
rs6590533	11:130765824	T/C	SNX19	intron	1.000	1.00844	0.0111	0.4517		7
rs6590535	11:130769033	T/C	SNX19	intron	0.995	0.92876	0.0134	3.853E-8		1f
rs6590536	11:130776690	T/C	SNX19	intron	1.000	0.99054	0.0111	0.3929		5
rs6590537	11:130776701	A/T	SNX19	intron	1.000	1.00934	0.0111	0.4025		5
rs6590538	11:130776865	T/C	SNX19	intron	1.000	1.00955	0.0111	0.3924		7
rs67649878	11:130759410	A/G	SNX19	intron	0.773	1.08145	0.0167	2.662E-6		6
rs7106173	11:130761726	A/T	SNX19	intron	0.996	0.99651	0.0110	0.7499		7
rs7106684	11:130758153	A/T	SNX19	intron	0.967	1.05844	0.0108	1.344E-7		7
rs7106995	11:130758152	T/G	SNX19	intron	0.965	0.94526	0.0108	1.768E-7		7
rs7107568	11:130779668	T/C	SNX19	intron	0.994	1.05834	0.0106	8.384E-8		4
rs7110949	11:130766005	C/G	SNX19	intron	1.000	0.99173	0.0111	0.4523		6
rs7110968	11:130766044	T/G	SNX19	intron	1.000	0.99164	0.0111	0.4509		7
rs7119794	11:130760999	T/G	SNX19	intron	0.996	0.99651	0.0110	0.7522		5
rs7119829	11:130761178	T/C	SNX19	intron	0.995	0.99641	0.0110	0.7424		7
rs71483640	11:130754521	C/G	SNX19	intron	0.991	0.96503	0.0189	0.05993		6
rs73028852	11:130777244	T/C	SNX19	intron	0.987	0.92867	0.0132	2.221E-8		7
rs73028872	11:130780587	T/C	SNX19	intron	0.999	1.07681	0.0131	1.472E-8		7
rs73028875	11:130780595	T/C	SNX19	intron	0.996	1.07745	0.0131	1.131E-8		7
rs73028877	11:130780616	T/C	SNX19	intron	0.999	0.92867	0.0131	1.477E-8		7
rs73028878	11:130780649	A/G	SNX19	intron	0.999	0.92867	0.0131	1.477E-8		7
rs73028880	11:130780771	T/C	SNX19	intron	0.999	1.07681	0.0131	1.473E-8		6
rs73028887	11:130782058	A/G	SNX19	intron	0.999	1.07681	0.0131	1.484E-8		5
rs73028888	11:130782064	A/G	SNX19	intron	0.999	0.92867	0.0131	1.487E-8		5
rs73028892	11:130782101	A/T	SNX19	intron	0.999	0.92867	0.0131	1.489E-8		5
rs73028894	11:130782159	C/G	SNX19	intron	0.999	0.92867	0.0131	1.486E-8		5
rs73028898	11:130783543	A/C	SNX19	intron	0.998	1.07659	0.0131	1.614E-8		4
rs73028899	11:130783697	A/G	SNX19	intron	0.998	0.92886	0.0131	1.639E-8		5
rs73028900	11:130783728	A/G	SNX19	intron	0.998	1.07659	0.0131	1.64E-8		5
rs73028901	11:130783765	T/C	SNX19	intron	0.997	0.92886	0.0131	1.643E-8		5
rs73028902	11:130783875	T/C	SNX19	intron	0.997	1.07659	0.0131	1.661E-8		7
rs74438160	11:130755929	A/T	SNX19	intron	0.614	0.91897	0.0541	0.1184		6
rs75011217	11:130771495	T/C	SNX19	intron	0.941	0.94696	0.0388	0.1605		7
rs75011833	11:130764418	C/G	SNX19	intron,near-gene-3	0.893	1.01603	0.0210	0.4491		4
rs76527978	11:130756022	A/G	SNX19	intron	0.987	1.02153	0.0214	0.3197		6
rs76677325	11:130765398	T/C	SNX19	intron	0.907	0.93988	0.0525	0.2379		7
rs77272503	11:130782087	C/G	SNX19	intron	0.999	1.07681	0.0131	1.479E-8		5
rs77383513	11:130765675	A/T	SNX19	intron	0.984	1.02870	0.0222	0.2023		7
rs78178813	11:130783779	A/G	SNX19	intron	0.937	1.03179	0.0260	0.2273		5
rs79138684	11:130773223	C/G	SNX19	missense	0.846	1.06951	0.0507	0.1847		6
rs7924736	11:130760562	T/C	SNX19	intron	0.996	1.00351	0.0110	0.7507		5
rs7937166	11:130759987	A/G	SNX19	intron	0.969	1.00642	0.0111	0.5637		7
rs7937514	11:130760203	T/C	SNX19	intron	0.984	1.00030	0.0110	0.9765		7
rs7937782	11:130760494	A/T	SNX19	intron	0.996	1.00341	0.0110	0.7596		2b
rs79925975	11:130775496	T/C	SNX19	intron,near-gene-3	0.953	0.96725	0.0256	0.194		3a
rs80040482	11:130779410	A/C	SNX19	intron	0.944	0.96889	0.0258	0.2206		5
rs80341375	11:130770811	A/C	SNX19	intron	0.984	0.97200	0.0222	0.2007		7
rs876641	11:130752040	A/C	SNX19	intron	1.000	1.05654	0.0106	1.888E-7		5
rs948085	11:130752567	A/G	SNX19	intron	1.000	1.02265	0.0121	0.06361		6
rs948086	11:130753069	A/G	SNX19	intron	0.993	0.92496	0.0132	3.154E-9		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
22196331	GWAS	177 cases; 436 controls
Reference	Study type	Sample size

eQTL Information