TAF5

Basic Information

Gene Symbol	TAF5
Entrez Id	6877
Position	chr10:105127724..105148822
Description	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10883857	10:105127587	T/G	TAF5	near-gene-5	1.000	0.96918	0.0106	0.003033		1f
rs10883858	10:105127708	A/G	TAF5	near-gene-5	1.000	0.96938	0.0106	0.003195		2b
rs10883859	10:105128134	T/G	TAF5	missense	0.937	0.96909	0.0112	0.005122		4
rs10883861	10:105129665	T/C	TAF5	intron	0.982	0.98098	0.0167	0.2488		5
rs117008171	10:105131834	T/C	TAF5	intron	0.852	0.95409	0.0414	0.2565		6
rs117582193	10:105135352	A/G	TAF5	intron	0.855	0.92811	0.0549	0.1743		7
rs12414443	10:105146342	A/G	TAF5	intron	1.000	1.03045	0.0106	0.004416		6
rs12776544	10:105126028	T/C	TAF5	near-gene-5	0.971	0.99551	0.0205	0.8273		7
rs141316512	10:105134965	T/C	TAF5	intron	0.796	0.96899	0.0689	0.6472		-
rs149562273	10:105134547	T/C	TAF5	intron	0.929	0.99521	0.0455	0.9168		-
rs185088034	10:105132154	T/C	TAF5	intron	0.764	1.02511	0.0361	0.4932		-
rs185335182	10:105129981	A/T	TAF5	intron	0.672	1.10672	0.0649	0.118		-
rs189688389	10:105140947	T/C	TAF5	intron	0.732	1.06205	0.0584	0.3025		-
rs2176448	10:105141034	A/T	TAF5	intron	0.987	1.03904	0.0109	0.000453		6
rs4918012	10:105130812	A/G	TAF5	intron	0.963	1.03272	0.0108	0.002888		7
rs59744322	10:105146692	T/G	TAF5	intron	1.000	0.97035	0.0106	0.004382		7
rs61869857	10:105132466	A/G	TAF5	intron	0.979	1.03427	0.0107	0.001677		7
rs61869858	10:105143438	T/C	TAF5	intron	0.951	1.05295	0.0283	0.06793		7
rs61871160	10:105144288	T/C	TAF5	intron	1.000	0.96986	0.0106	0.003726		6
rs61871162	10:105145657	A/G	TAF5	intron	1.000	1.03066	0.0106	0.004265		7
rs72847518	10:105127191	A/C	TAF5	near-gene-5	0.821	1.02870	0.0281	0.3134		4
rs77467282	10:105143723	A/T	TAF5	intron	0.623	0.88161	0.0346	0.000273		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information