VPS37A

Basic Information

Gene Symbol	VPS37A
Entrez Id	137492
Position	chr8:17104401..17155533
Description	vacuolar protein sorting 37 homolog A (S. cerevisiae)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10087602	8:17133045	A/G	VPS37A	intron	1.000	1.03987	0.0143	0.006047		7
rs10091766	8:17139391	T/C	VPS37A	intron	0.986	1.04164	0.0109	0.0001968		6
rs10094736	8:17130582	T/C	VPS37A	intron	0.985	0.95657	0.0109	0.00004409		7
rs10095374	8:17117930	T/G	VPS37A	intron	0.988	1.04446	0.0114	0.0001347		6
rs10096891	8:17149429	A/G	VPS37A	intron	0.998	0.96493	0.0149	0.01675		6
rs10097407	8:17113628	A/T	VPS37A	intron	0.988	1.06396	0.0173	0.0003362		4
rs10098016	8:17114319	A/G	VPS37A	intron	0.986	0.96165	0.0113	0.0005469		6
rs10110023	8:17140378	A/G	VPS37A	intron	1.010	0.97883	0.0129	0.09607		7
rs10111267	8:17114128	T/C	VPS37A	intron	0.986	1.04008	0.0113	0.0005132		7
rs10112427	8:17147145	T/C	VPS37A	intron	0.995	0.94942	0.0118	0.00001101		7
rs1012340	8:17133568	C/G	VPS37A	intron	0.962	0.97268	0.0109	0.01072		6
rs1029335	8:17107048	T/C	VPS37A	intron	0.995	0.97122	0.0144	0.04335		5
rs1029336	8:17133403	T/C	VPS37A	intron	0.859	1.00995	0.0611	0.8715		6
rs10503590	8:17138539	A/G	VPS37A	intron	0.982	1.01806	0.0136	0.1891		6
rs10503591	8:17144737	A/T	VPS37A	intron	0.982	0.99233	0.0182	0.672		6
rs112883223	8:17145144	A/G	VPS37A	intron	0.997	0.99342	0.0294	0.8212		6
rs113371448	8:17119949	T/C	VPS37A	intron	0.654	0.92469	0.0648	0.2267		7
rs113372744	8:17144910	A/G	VPS37A	intron	0.997	0.99213	0.0295	0.7878		7
rs113793672	8:17120352	A/T	VPS37A	intron	0.985	1.01704	0.0297	0.5688		6
rs116995403	8:17130925	C/G	VPS37A	intron	0.992	1.06449	0.0172	0.000273		6
rs117154585	8:17139891	T/C	VPS37A	intron	0.745	1.05054	0.0478	0.3017		7
rs117165264	8:17126348	T/C	VPS37A	intron	0.880	1.13803	0.0414	0.001806		6
rs117254645	8:17149499	A/G	VPS37A	intron	0.980	1.00511	0.0182	0.7816		7
rs117531853	8:17151981	T/C	VPS37A	intron	0.996	1.06375	0.0172	0.0003279		6
rs117541783	8:17151631	T/C	VPS37A	intron	0.989	1.06024	0.0171	0.0006049		5
rs117744731	8:17112097	T/C	VPS37A	intron	0.797	0.95925	0.0618	0.5003		7
rs117747577	8:17147179	A/T	VPS37A	intron	0.997	1.06386	0.0171	0.000296		7
rs11782746	8:17107284	T/G	VPS37A	intron	0.983	1.00864	0.0254	0.7338		6
rs11782959	8:17122984	T/C	VPS37A	intron	0.997	1.02696	0.0145	0.06716		4
rs11784507	8:17114541	T/C	VPS37A	intron	0.982	1.01157	0.0254	0.6518		5
rs118073623	8:17113577	T/C	VPS37A	intron	0.765	0.95456	0.0532	0.3818		3a
rs11991741	8:17111633	A/G	VPS37A	intron	0.992	0.99690	0.0242	0.8968		5
rs11994010	8:17138669	A/G	VPS37A	intron	0.983	0.98442	0.0117	0.1783		6
rs13268068	8:17134982	A/G	VPS37A	intron	0.992	1.02061	0.0143	0.1537		4
rs138399834	8:17146323	A/G	VPS37A	intron	0.991	1.03603	0.0406	0.383		-
rs138727042	8:17115518	T/G	VPS37A	intron	0.912	0.93491	0.0339	0.04746		-
rs138944297	8:17120056	C/G	VPS37A	intron	0.989	1.04164	0.0405	0.3137		-
rs139787116	8:17129102	A/G	VPS37A	intron	0.991	0.96204	0.0405	0.3396		-
rs140136007	8:17149553	A/G	VPS37A	intron	0.979	1.00541	0.0182	0.7683		-
rs140422709	8:17136013	A/T	VPS37A	intron	0.834	0.97814	0.0356	0.5343		-
rs141412536	8:17131076	T/C	VPS37A	intron	0.976	0.98639	0.0258	0.5938		-
rs142811814	8:17128736	A/G	VPS37A	intron	0.704	1.03956	0.0452	0.3898		-
rs143312828	8:17150283	A/C	VPS37A	intron	0.967	0.96764	0.0415	0.4283		-
rs143458048	8:17152257	A/C	VPS37A	intron	0.982	1.00562	0.0182	0.7592		-
rs143964626	8:17149847	C/G	VPS37A	intron	0.980	0.99501	0.0182	0.785		-
rs144062402	8:17135615	T/G	VPS37A	intron	0.883	0.88719	0.0370	0.001217		-
rs144515271	8:17124513	C/G	VPS37A	intron	0.970	0.97590	0.0255	0.3386		-
rs144585811	8:17147285	A/C	VPS37A	intron	0.676	1.00230	0.0519	0.9644		-
rs144990539	8:17129112	C/G	VPS37A	intron	0.992	0.93857	0.0172	0.0002346		-
rs145897040	8:17152369	C/G	VPS37A	intron	0.924	1.08318	0.0344	0.02014		-
rs146625774	8:17130633	A/T	VPS37A	intron	0.991	1.03935	0.0405	0.3409		-
rs147419628	8:17129057	T/G	VPS37A	intron	0.973	0.91028	0.0297	0.001561		-
rs147453242	8:17147449	T/C	VPS37A	intron	0.992	1.00914	0.0297	0.7582		-
rs148193509	8:17149000	C/G	VPS37A	intron	0.997	0.93998	0.0172	0.0003156		-
rs148497222	8:17150378	T/C	VPS37A	intron	0.988	0.97268	0.0404	0.4927		-
rs148959074	8:17145010	T/C	VPS37A	intron	0.965	1.00070	0.0187	0.9694		-
rs149266306	8:17146427	A/G	VPS37A	intron	0.996	0.99193	0.0296	0.7853		-
rs150714830	8:17138545	A/G	VPS37A	intron	0.935	0.99661	0.0406	0.9334		-
rs150872946	8:17143670	T/C	VPS37A	intron	0.992	0.96551	0.0406	0.3868		-
rs1544320	8:17136660	T/C	VPS37A	intron	0.995	0.98629	0.0298	0.642		7
rs17124312	8:17141732	A/C	VPS37A	intron	1.000	1.01025	0.0293	0.7266		6
rs17502618	8:17132441	A/T	VPS37A	missense	0.725	0.95047	0.0580	0.3804		6
rs17502646	8:17138188	T/C	VPS37A	intron	0.947	0.88559	0.0352	0.0005517		7
rs17587086	8:17137413	A/G	VPS37A	intron	0.993	0.98059	0.0143	0.1706		7
rs17587134	8:17142316	C/G	VPS37A	intron	0.949	1.12930	0.0352	0.0005476		5
rs17687363	8:17124233	A/T	VPS37A	intron	0.991	1.06556	0.0172	0.0002293		5
rs184030264	8:17131021	A/G	VPS37A	intron	0.895	0.98570	0.0552	0.7942		-
rs185516444	8:17130117	A/G	VPS37A	intron	0.717	1.03128	0.0487	0.5273		-
rs193027322	8:17147418	C/G	VPS37A	intron	0.732	0.95332	0.0621	0.4419		-
rs2188015	8:17138567	T/C	VPS37A	intron	0.999	1.04550	0.0153	0.003494		7
rs2285269	8:17142065	T/C	VPS37A	coding-synon	0.998	1.03749	0.0150	0.01429		7
rs2285270	8:17154661	A/C	VPS37A	untranslated-3	0.999	1.01025	0.0296	0.7293		6
rs2410517	8:17151259	C/G	VPS37A	intron	0.979	0.97297	0.0111	0.01315		5
rs2410533	8:17127712	A/T	VPS37A	intron	0.963	0.95571	0.0146	0.001857		6
rs28403217	8:17130335	A/G	VPS37A	intron	0.991	1.01268	0.0297	0.6712		7
rs28502188	8:17124102	C/G	VPS37A	intron	0.991	1.06556	0.0172	0.0002293		4
rs28787950	8:17146298	A/G	VPS37A	intron	0.963	0.96735	0.0108	0.002118		7
rs2959614	8:17105771	T/C	VPS37A	intron,near-gene-5	0.717	1.00481	0.0128	0.7064		5
rs2959615	8:17105698	T/C	VPS37A	intron,near-gene-5	0.985	1.04133	0.0112	0.0002912		7
rs3213601	8:17137687	A/G	VPS37A	intron	0.989	0.97103	0.0107	0.005742		7
rs34516488	8:17146216	A/G	VPS37A	intron	0.992	1.02984	0.0106	0.00574		7
rs35853435	8:17155316	T/G	VPS37A	near-gene-3,untranslated-3	0.997	1.02000	0.0143	0.1641		6
rs3793427	8:17143830	C/G	VPS37A	intron	0.994	1.05485	0.0119	6.627E-6		7
rs3793428	8:17144020	A/C	VPS37A	intron	0.999	1.03925	0.0143	0.007003		7
rs4921742	8:17142567	A/T	VPS37A	intron	0.955	0.96464	0.0112	0.001235		3a
rs4922276	8:17130454	T/C	VPS37A	intron	0.877	1.05643	0.0192	0.004211		6
rs4922277	8:17138857	C/G	VPS37A	intron	0.987	1.04112	0.0109	0.0002298		7
rs4922279	8:17146563	A/G	VPS37A	intron	0.992	0.97151	0.0106	0.006613		7
rs59735615	8:17144407	A/G	VPS37A	intron	0.997	1.00793	0.0295	0.7902		7
rs6587025	8:17109523	A/G	VPS37A	intron	0.976	1.04854	0.0110	0.00001549		7
rs6587026	8:17120030	A/G	VPS37A	intron	0.987	1.04498	0.0116	0.000141		6
rs6587027	8:17153316	A/G	VPS37A	untranslated-3	0.953	0.96851	0.0391	0.4131		7
rs67726442	8:17130532	T/C	VPS37A	intron	0.824	1.03087	0.0166	0.0669		6
rs6988303	8:17122218	A/G	VPS37A	intron	0.992	0.97151	0.0139	0.03753		5
rs6998288	8:17123747	A/T	VPS37A	intron	0.984	0.97035	0.0121	0.01276		6
rs6998299	8:17123765	A/T	VPS37A	intron	0.979	0.95562	0.0111	0.00004214		6
rs7001620	8:17112491	A/G	VPS37A	intron	0.873	0.97229	0.0145	0.05334		2b
rs7007448	8:17135287	A/G	VPS37A	intron	0.981	1.03221	0.0108	0.003365		7
rs7011061	8:17148509	A/G	VPS37A	intron	0.998	1.03759	0.0149	0.01348		6
rs7013924	8:17123820	A/G	VPS37A	intron	0.983	1.02829	0.0124	0.02407		7
rs7018019	8:17130020	C/G	VPS37A	intron	0.983	1.04321	0.0110	0.0001166		7
rs73200921	8:17105540	T/C	VPS37A	intron,near-gene-5	0.983	1.00854	0.0254	0.738		5
rs73200923	8:17107429	T/G	VPS37A	intron	0.987	1.06301	0.0173	0.0004128		7
rs73200925	8:17112107	A/T	VPS37A	intron	0.988	1.06332	0.0173	0.000382		6
rs73200928	8:17117909	A/G	VPS37A	intron	0.966	1.01542	0.0262	0.5592		6
rs73200931	8:17120024	T/G	VPS37A	intron	0.987	0.94064	0.0173	0.000403		6
rs73200934	8:17121670	T/C	VPS37A	intron	0.986	1.00622	0.0254	0.8076		5
rs73200936	8:17121711	A/C	VPS37A	intron	0.986	0.99382	0.0254	0.808		5
rs73200937	8:17121775	T/G	VPS37A	intron	0.989	0.93923	0.0173	0.0002811		5
rs73200939	8:17123814	A/G	VPS37A	intron	0.970	0.99253	0.0184	0.6836		6
rs73200948	8:17125957	C/G	VPS37A	intron	0.991	1.06524	0.0172	0.0002483		7
rs73200950	8:17127945	C/G	VPS37A	intron	0.960	1.05295	0.0195	0.008172		7
rs73200951	8:17129449	C/G	VPS37A	intron	0.992	0.93857	0.0172	0.000235		6
rs73208566	8:17133615	A/G	VPS37A	intron	0.987	0.99312	0.0184	0.7072		7
rs73208567	8:17133655	A/G	VPS37A	intron	0.988	0.99302	0.0184	0.7023		6
rs73208569	8:17134608	T/C	VPS37A	intron	0.996	0.93885	0.0172	0.0002448		6
rs73208572	8:17135642	A/G	VPS37A	intron	0.997	1.06513	0.0172	0.0002411		4
rs73208577	8:17139635	T/G	VPS37A	intron	0.989	0.94205	0.0171	0.0004692		6
rs73208578	8:17140305	T/C	VPS37A	intron	0.998	0.93904	0.0171	0.0002313		6
rs73208582	8:17141481	C/G	VPS37A	intron	0.996	0.93932	0.0171	0.0002536		6
rs73208583	8:17141726	A/G	VPS37A	intron	0.981	1.00662	0.0183	0.7192		6
rs73208584	8:17142339	T/C	VPS37A	intron	0.979	0.99591	0.0181	0.8219		5
rs73208588	8:17144588	A/C	VPS37A	intron	0.982	1.00682	0.0183	0.7113		7
rs73208598	8:17154292	A/G	VPS37A	near-gene-3,untranslated-3	0.998	0.93988	0.0171	0.0002916		7
rs73551456	8:17113853	C/G	VPS37A	intron	0.992	0.99621	0.0240	0.8752		7
rs73551480	8:17121233	A/G	VPS37A	intron	0.990	1.03769	0.0149	0.01322		7
rs74350966	8:17133007	C/G	VPS37A	intron	0.993	0.96252	0.0406	0.3467		7
rs74607568	8:17114511	A/G	VPS37A	intron	0.989	0.95935	0.0404	0.305		5
rs74962716	8:17126846	A/G	VPS37A	intron	0.991	0.96194	0.0405	0.3375		6
rs75809533	8:17115550	T/C	VPS37A	intron	0.982	1.01532	0.0299	0.6117		5
rs75853530	8:17107531	A/G	VPS37A	intron	0.987	0.94101	0.0173	0.0004465		7
rs76044875	8:17118386	C/G	VPS37A	intron	0.989	0.95993	0.0405	0.3114		5
rs77336290	8:17111838	C/G	VPS37A	intron	0.991	0.99561	0.0250	0.859		4
rs77484694	8:17108538	C/G	VPS37A	intron	0.988	0.99631	0.0251	0.8837		5
rs77650966	8:17112626	A/G	VPS37A	intron	0.992	0.99501	0.0248	0.8414		4
rs77776746	8:17130016	C/G	VPS37A	intron	0.991	1.04289	0.0405	0.2994		7
rs77844290	8:17145310	A/G	VPS37A	intron	0.996	1.00803	0.0295	0.787		7
rs78102609	8:17118140	T/C	VPS37A	intron	0.984	1.01532	0.0298	0.6108		5
rs7815340	8:17143246	A/G	VPS37A	intron	0.988	1.04592	0.0110	0.00004382		7
rs7828878	8:17112985	T/C	VPS37A	intron	0.942	0.98531	0.0293	0.6146		4
rs79081248	8:17116843	A/G	VPS37A	intron	0.982	1.01949	0.0313	0.537		3a
rs79130853	8:17109168	T/C	VPS37A	intron	0.989	1.00381	0.0250	0.8793		7
rs79287492	8:17117500	T/C	VPS37A	intron	0.983	0.98472	0.0299	0.6076		5
rs79740248	8:17106986	T/C	VPS37A	intron	0.685	0.99990	0.0326	0.9971		5
rs80159594	8:17127294	T/C	VPS37A	intron	0.986	1.01329	0.0337	0.695		7
rs80256356	8:17116500	C/G	VPS37A	intron	0.989	0.95983	0.0404	0.3112		7
rs80352079	8:17118190	A/G	VPS37A	intron	0.989	0.95993	0.0405	0.3115		5
rs8276	8:17152857	T/G	VPS37A	untranslated-3	0.990	1.03179	0.0107	0.003334		7
rs9325807	8:17145484	A/G	VPS37A	intron	0.988	1.04718	0.0109	0.00002345		6
rs9644664	8:17135976	T/G	VPS37A	intron	0.990	1.04603	0.0110	0.00004298		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
19197363	GWAS	European ancestry:1013 cases and 1084; African ancestry: 60 cases and 81 controls
Reference	Study type	Sample size

eQTL Information