ZSCAN2

Basic Information

Gene Symbol	ZSCAN2
Entrez Id	54993
Position	chr15:85144249..85166947
Description	zinc finger and SCAN domain containing 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10083683	15:85159397	C/G	ZSCAN2	intron	0.990	1.04144	0.0148	0.006057		6
rs118055229	15:85151820	A/G	ZSCAN2	intron	0.846	1.01096	0.0485	0.8223		5
rs118100402	15:85154382	T/C	ZSCAN2	intron	0.838	1.05612	0.0533	0.3055		7
rs12438261	15:85162251	A/T	ZSCAN2	intron	0.711	1.06131	0.0561	0.289		7
rs12593423	15:85153179	A/G	ZSCAN2	intron	0.992	1.03697	0.0152	0.0165		5
rs12913702	15:85153184	A/G	ZSCAN2	intron	0.975	0.93128	0.0117	1.293E-9		5
rs142027933	15:85160528	A/G	ZSCAN2	intron	0.838	1.05770	0.0533	0.2931		-
rs147294178	15:85150902	A/G	ZSCAN2	intron	0.861	0.97093	0.0525	0.5738		-
rs150606231	15:85154137	A/G	ZSCAN2	intron	0.927	1.04823	0.0532	0.3757		-
rs16974946	15:85154117	T/C	ZSCAN2	intron	0.946	0.98482	0.0156	0.3273		6
rs16974951	15:85161272	T/C	ZSCAN2	intron	0.961	1.02306	0.0144	0.1128		7
rs2036949	15:85163605	T/C	ZSCAN2	intron	0.997	1.07487	0.0121	2.34E-9		6
rs2044502	15:85163998	C/G	ZSCAN2	missense	0.999	0.97629	0.0142	0.09058		7
rs2271433	15:85149771	T/G	ZSCAN2	intron,missense	0.990	0.96541	0.0152	0.02079		4
rs2341185	15:85152937	C/G	ZSCAN2	intron	0.987	0.95983	0.0148	0.005768		7
rs28708599	15:85160333	A/G	ZSCAN2	intron,near-gene-3	0.954	0.97541	0.0115	0.03005		7
rs61322921	15:85163638	T/C	ZSCAN2	intron	0.997	0.96146	0.0107	0.0002427		6
rs6496164	15:85151625	A/G	ZSCAN2	intron	0.968	1.04164	0.0148	0.005783		7
rs71395455	15:85153804	A/G	ZSCAN2	intron	0.973	1.07412	0.0117	1.079E-9		7
rs7180956	15:85162553	T/C	ZSCAN2	intron	0.953	1.03925	0.0109	0.0004107		6
rs7181035	15:85162429	A/G	ZSCAN2	intron	0.924	0.97648	0.0137	0.08148		6
rs72630460	15:85158656	T/G	ZSCAN2	intron	0.960	1.02306	0.0144	0.1124		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information