ZSCAN23

Basic Information

Gene Symbol	ZSCAN23
Entrez Id	222696
Position	chr6:28400432..28411279
Description	zinc finger and SCAN domain containing 23
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs13190937	6:28411244	A/G	ZSCAN23	untranslated-5	1.000	0.91677	0.0117	8.99E-14		4
rs13215476	6:28406136	A/T	ZSCAN23	intron	1.000	0.92561	0.0111	3.267E-12		7
rs147684053	6:28406285	C/G	ZSCAN23	intron	0.926	0.92997	0.0503	0.1486		-
rs16894106	6:28400339	A/G	ZSCAN23	intron,near-gene-3	1.010	0.90574	0.0126	4.408E-15		7
rs16894108	6:28401790	A/G	ZSCAN23	intron,untranslated-3	1.000	1.08665	0.0117	1.216E-12		7
rs17315648	6:28402260	T/C	ZSCAN23	coding-synon	1.010	0.99193	0.0225	0.7199		6
rs17315739	6:28405796	A/G	ZSCAN23	intron	1.000	0.99372	0.0226	0.7816		6
rs17393918	6:28399713	C/G	ZSCAN23	untranslated-3	1.010	0.99173	0.0225	0.712		7
rs17393939	6:28399962	A/T	ZSCAN23	intron,near-gene-3	1.010	1.00833	0.0225	0.7124		7
rs182348018	6:28405285	A/G	ZSCAN23	intron	0.976	0.92358	0.0590	0.1778		-
rs2023493	6:28400162	T/C	ZSCAN23	intron,near-gene-3	1.000	1.07670	0.0109	9.696E-12		7
rs2071965	6:28403225	T/C	ZSCAN23	intron	1.000	0.92017	0.0117	1.108E-12		7
rs2531801	6:28404697	T/C	ZSCAN23	intron	1.010	0.99332	0.0528	0.8985		6
rs2531803	6:28411220	T/G	ZSCAN23	untranslated-5	1.000	1.07466	0.0106	1.21E-11		4
rs41270589	6:28403440	A/G	ZSCAN23	intron	0.994	1.02542	0.0236	0.288		7
rs60660967	6:28406449	A/G	ZSCAN23	intron	1.010	1.00682	0.0226	0.762		6
rs66542396	6:28405935	A/G	ZSCAN23	intron	0.993	1.08307	0.0112	1.161E-12		7
rs6917130	6:28406821	A/G	ZSCAN23	intron	1.000	1.07961	0.0111	4.603E-12		6
rs73740620	6:28404850	T/G	ZSCAN23	intron	1.010	1.00844	0.0225	0.7074		6
rs73740621	6:28411219	A/C	ZSCAN23	untranslated-5	0.994	1.01015	0.0229	0.6595		4
rs758396	6:28408351	A/G	ZSCAN23	intron	0.999	1.00552	0.0226	0.8062		7
rs77987369	6:28410755	T/C	ZSCAN23	intron	0.999	0.99005	0.0165	0.5451		5
rs79325481	6:28405959	T/C	ZSCAN23	intron	0.999	1.01035	0.0165	0.5333		7
rs916403	6:28408258	A/G	ZSCAN23	intron	1.010	1.07476	0.0106	9.577E-12		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information